Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M20
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   2.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   4.5  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    26   6.0  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    26   7.9  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 215 VKFNKSGRKIFSLMNLTHVTIVYLTRAKNLFKKVLLNSL 99
           + F K   ++F   N  + TI+Y TR K    + LLNSL
Sbjct: 344 LSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSL 382


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 478 QNLTRRSSRPPGMRCGSRGFRKLSHLPGPDPGHTRRP 368
           +N TR+S +P   +  SRG RK       DP     P
Sbjct: 153 RNATRKSKKPSASKDTSRGVRKSKAGAPSDPSSVHAP 189


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 142 HAQKIYLKKSFLIRSVKCLSRILCGSKTANTSKRRPYYVKFTTEMN 5
           H  K       LI S+   S IL  +   +++ +RP YV    +MN
Sbjct: 165 HVLKKTTDHPILIHSIDQSSEILGAAVWTSSNSKRPVYVSIGNQMN 210


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 534 AKLDLTEGR--LVVADLEVARRIVAYIAQAETGDCTPEMPPPHIYEECNKIGPQGE-KPE 704
           A++ + +G+  LVV +++V    ++Y  Q E    +P  P       CN +G  GE +PE
Sbjct: 184 AEVPMPKGQEMLVVFNIQVQLAQLSYNDQVEWNLTSPLTPEEFSVLTCNDLGLSGESRPE 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,941
Number of Sequences: 5004
Number of extensions: 64664
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)