Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M20
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.39 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.89 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 381  TRADRNSLPRHRSPISRIPSQGTLDQSH 298
            +R+   S+PR     SR+PSQG    +H
Sbjct: 1773 SRSGSQSMPRQNGRYSRVPSQGGGSGTH 1800



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 510 TRHQFYLHAKLDLTEGRLVVAD 575
           T+H+     +L  T+GRLV+ +
Sbjct: 183 TKHRLTGETRLSATKGRLVITE 204


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 272 DLGNQGGPKCDWSRV 316
           DLG +GG +  WSRV
Sbjct: 379 DLGKEGGLEAQWSRV 393


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 636 PEMPPPHIYEECNKIGPQGE 695
           P +PP  ++ EC  +   GE
Sbjct: 439 PPLPPLPLHTECEDLSVSGE 458


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 636 PEMPPPHIYEECNKIGPQGE 695
           P +PP  ++ EC  +   GE
Sbjct: 439 PPLPPLPLHTECEDLSVSGE 458


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 348  RSPISRIPSQGTLDQSHLGP 289
            R+P+ R+    + D+S+ GP
Sbjct: 1338 RTPVPRLAQDSSEDESYRGP 1357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,312
Number of Sequences: 438
Number of extensions: 4331
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)