Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_M17
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 29 4.8
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 29 4.8
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 29 4.8
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 29 4.8
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 29 4.8
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 29 4.8
02_02_0675 + 12845980-12846111,12846211-12846363,12846954-128471... 29 6.4
07_03_0899 + 22421038-22422642 28 8.4
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 28 8.4
02_05_0504 - 29590852-29591862 28 8.4
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 76 FPFPRF*KIQHMRTFTSNNCHEP 8
FPFPR+ K+Q M+ NN H P
Sbjct: 358 FPFPRYGKLQLMKEPRENNPHVP 380
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 362 QGSVVCCCSV-RXADQSGDVSASLTVHVLNMSSTLTLTRDDLPVDPGPH 505
QG+ + SV + AD+ GDV A + ++M S + + D GPH
Sbjct: 428 QGNQISSTSVTKDADRDGDVKAPVAEPEIHMESDINSASELRTKDTGPH 476
>04_04_1328 -
32682087-32682200,32682290-32682365,32682442-32682698,
32682788-32682886,32682965-32683163,32683247-32683460,
32683615-32683683,32683772-32684096,32684211-32684381,
32684461-32684625,32684701-32684814,32685228-32685336,
32685403-32685464,32685726-32685797,32686401-32686436,
32686506-32686634
Length = 736
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 76 FPFPRF*KIQHMRTFTSNNCHEP 8
FPFPR+ K+Q M+ NN H P
Sbjct: 220 FPFPRYGKLQLMKEPRENNPHVP 242
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 76 FPFPRF*KIQHMRTFTSNNCHEP 8
FPFPR+ K+Q M+ NN H P
Sbjct: 358 FPFPRYGKLQLMKEPRENNPHVP 380
>02_04_0664 +
24826714-24826842,24826912-24826947,24827551-24827622,
24827882-24827943,24828010-24828646,24828722-24828886,
24828966-24829136,24829251-24829575,24829663-24829731,
24829886-24830099,24830183-24830381,24830460-24830558,
24830648-24830904,24830981-24831056,24831146-24831259
Length = 874
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 76 FPFPRF*KIQHMRTFTSNNCHEP 8
FPFPR+ K+Q M+ NN H P
Sbjct: 358 FPFPRYGKLQLMKEPRENNPHVP 380
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 76 FPFPRF*KIQHMRTFTSNNCHEP 8
FPFPR+ K+Q M+ NN H P
Sbjct: 358 FPFPRYGKLQLMKEPRENNPHVP 380
>02_02_0675 +
12845980-12846111,12846211-12846363,12846954-12847100,
12847372-12847656
Length = 238
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = +2
Query: 314 YREEHKTVPDCSGLAPQGSVVCCCSVRXADQSGDVSASLTVHVLNMSSTLTLTRDDLPVD 493
+R + P GLA +G VV CCS A SG S S + VL + L LP
Sbjct: 7 FRSVARAPPPLRGLARRG-VVHCCST--APPSGGTSTSSSKLVLEVKERLEREHPGLPTG 63
Query: 494 PGPHSD 511
D
Sbjct: 64 RNGRDD 69
>07_03_0899 + 22421038-22422642
Length = 534
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 549 LTTGYLCNTLPRVVIGRRSMLCMNMLTVCSA 641
L G+L TL ++GRR ML ++++T+ A
Sbjct: 139 LAGGFLLTTLADTLLGRRKMLVLSLVTMSVA 169
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 473 RDDLPVDPGPHSDGQERQARGRAPGINDRIFVQYSSPSRHRSKIDALHEYVD 628
R LPV+P S+G+ Q RGR +D I Q SR S I+ + + D
Sbjct: 532 RAHLPVEPEEQSEGKVIQRRGRFQVTSDSI-AQKEVISRLISSIEEISDAAD 582
>02_05_0504 - 29590852-29591862
Length = 336
Score = 28.3 bits (60), Expect = 8.4
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = +2
Query: 497 GPHSDGQERQARGRAPGINDR----IFVQYSSPSRHRSKIDALHEYVDRLFSTPDCGTAP 664
G S G R+ RGR PG ++ I V SP +ALH +V + D
Sbjct: 91 GSGSGGPTRRPRGRPPGSKNKPKPPIIVTRDSP-------NALHSHVLEVAGGADVVDCV 143
Query: 665 VEYVDYCRHSPCVLWGDG 718
EY CVL G G
Sbjct: 144 AEYARRRGRGVCVLSGGG 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,089,390
Number of Sequences: 37544
Number of extensions: 451916
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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