Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M17
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin...    29   3.3  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   5.7  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    28   7.5  
U00051-9|AAM29693.1|  503|Caenorhabditis elegans Aldehyde dehydr...    28   9.9  
U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde dehydr...    28   9.9  

>AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin
           protein 70 protein.
          Length = 466

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 619 FMQSIDLRPMTTRGRVLHKYPVVNAGCSSTGLPLLTV 509
           FMQSID+ P+  R  +    PVV  G     LPLL V
Sbjct: 332 FMQSIDMMPLIERYPIYAANPVV-TGAGFKDLPLLEV 367


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
            protein protein12 protein.
          Length = 1847

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 601  LRPMT-TRGRVLHKYPVVNAGCSSTGLPLLTVGVGPRIHWEVIPSECEGRR 452
            L P+T +R   L  +P +    +    PL+ + VG +I   V+P +  GRR
Sbjct: 1278 LIPVTVSRVASLDVHPTIELKSAFENSPLIHLPVGAQIQLNVVPRDARGRR 1328


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/45 (40%), Positives = 19/45 (42%)
 Frame = -3

Query: 605 RSSTDDDSGKSIAQISGR*CRVLVHGPASPDRRSGAPDPLGGHPE 471
           R STD D   + A      C V   GPA      G P P GGH E
Sbjct: 126 RDSTDKDEKPTAADFCFD-CPVGPAGPAGGPGPKGPPGPPGGHGE 169


>U00051-9|AAM29693.1|  503|Caenorhabditis elegans Aldehyde
           dehydrogenase protein11, isoform b protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 629 GQHIHAEHRSSTDDDSGKSIAQISGR*C---RVLVHG 528
           G HI AEHR+  +     +IA+ + + C   RV VHG
Sbjct: 339 GSHISAEHRNKVEGYISTAIAEGATKLCGGDRVAVHG 375


>U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde
           dehydrogenase protein11, isoform a protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 629 GQHIHAEHRSSTDDDSGKSIAQISGR*C---RVLVHG 528
           G HI AEHR+  +     +IA+ + + C   RV VHG
Sbjct: 523 GSHISAEHRNKVEGYISTAIAEGATKLCGGDRVAVHG 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,562,162
Number of Sequences: 27780
Number of extensions: 387625
Number of successful extensions: 798
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)