Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_M16
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 286 2e-78
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.86
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 1.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.6
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 4.6
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 6.1
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 6.1
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 8.1
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 286 bits (702), Expect = 2e-78
Identities = 130/215 (60%), Positives = 168/215 (78%), Gaps = 1/215 (0%)
Frame = +2
Query: 98 FKKIAVVPAAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 277
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 278 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 457
+QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66 LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125
Query: 458 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICG-XQMSENQVL 634
CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP TRT+++CG + ++ +
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFM 185
Query: 635 LIKXPC*CGSAAICVYTXSLYVGHTDYKYLRWQVI 739
T SL+VGH DYKYLRWQVI
Sbjct: 186 NKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVI 220
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +2
Query: 53 DTKIALN*NKMSLYNFKKIAVVPAAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 232
+TK+ LN ++S+ FKK + A D +K + P V+++H F +
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351
Query: 233 VKYTQQNFHDRLSRI 277
++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 461 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGXQMSENQVL 634
K LKR LG AT + GAN+ H P DP +T+++ G +L
Sbjct: 53 KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLPDPSKKTLVVLGAGWGATSIL 107
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 104 KIAVVPAAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 220
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 220 KPTYS*YFIMLVNDCRSFPLCFR*N 146
+PTY+ YFI L++D R C+ N
Sbjct: 95 RPTYTHYFIRLLHDKRLLQKCYTQN 119
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +2
Query: 80 KMSLYNFKKIAVVPAAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 256
K++ FK IA + F+D +S R T + +++ GF +K + F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603
Query: 257 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 340
+ LS ++ + F K+DD + Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 200 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 379
+S IR R+ K + LSR I + KLD V PF +M +L D+ + + + L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492
Query: 380 NTARHLIDNV 409
T L+ NV
Sbjct: 493 ITITRLVSNV 502
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 110 AVVPAAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEF 289
AV A +DF +L TPT+ HY+ IR YI + F R+S + + F
Sbjct: 150 AVKDAIEDFRRTMLDIHLNNTPTLRLSHYQNPNIRTEYISYFR----RFKKRISALFRVF 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,086
Number of Sequences: 5004
Number of extensions: 67564
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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