Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M16
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0668 - 4882174-4884204                                          301   5e-82
07_01_0075 - 558829-560859                                            298   4e-81
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342...    47   2e-05
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911...    30   2.8  
08_02_1310 - 26037025-26038074                                         29   6.4  

>06_01_0668 - 4882174-4884204
          Length = 676

 Score =  301 bits (739), Expect = 5e-82
 Identities = 142/220 (64%), Positives = 171/220 (77%), Gaps = 1/220 (0%)
 Frame = +2

Query: 83  MSLYNFKKIAVVPAAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 262
           M  YNFK+I VVP  KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1   MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYE 60

Query: 263 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 442
           +LS +I +FP+LDD+HPFY DL++VLY+KDHYKL LGQ+NTAR++I  +AKDY+RLLKYG
Sbjct: 61  KLSTVIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120

Query: 443 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGXQMSE 622
           DSLYRCK LK AALGRM T++KR   +L YLEQ+RQH+ARLPSIDP TRT++ICG     
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVG 180

Query: 623 NQVLLIKXP-C*CGSAAICVYTXSLYVGHTDYKYLRWQVI 739
               + K              T SL+VGH DYKYLR+QVI
Sbjct: 181 KSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVI 220


>07_01_0075 - 558829-560859
          Length = 676

 Score =  298 bits (731), Expect = 4e-81
 Identities = 141/220 (64%), Positives = 170/220 (77%), Gaps = 1/220 (0%)
 Frame = +2

Query: 83  MSLYNFKKIAVVPAAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 262
           M  YNFK+I VVP  KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1   MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYE 60

Query: 263 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 442
           +LS +I +FP+LD +HPFY DL++VLY+KDHYKL LGQ+NTAR++I  +AKDY+RLLKYG
Sbjct: 61  KLSTVIDDFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120

Query: 443 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGXQMSE 622
           DSLYRCK LK AALGRM T++KR   +L YLEQ+RQH+ARLPSIDP TRT++ICG     
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVG 180

Query: 623 NQVLLIKXP-C*CGSAAICVYTXSLYVGHTDYKYLRWQVI 739
               + K              T SL+VGH DYKYLR+QVI
Sbjct: 181 KSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVI 220


>08_01_0387 -
           3426058-3426168,3426279-3426473,3426612-3426724,
           3427121-3427157,3427270-3427341,3427849-3427962,
           3428129-3428200,3428343-3428381,3429340-3429414,
           3429561-3429674,3429749-3429813,3429927-3430047,
           3430942-3431063,3431547-3431634
          Length = 445

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 7/220 (3%)
 Frame = +2

Query: 98  FKKIAVVPAAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 274
           F++I +V  A D +     K++   PT  +    K  R +G   +++    +     L  
Sbjct: 83  FQRIPMVMPATDILMSAQRKSRNVPPTKGIANIAKRERNKG--AKQLDALMKEISVPLRT 140

Query: 275 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 454
             + FPK  D+HP+   L+ + + + +Y+  + +++  R  I++V K +  +     SL 
Sbjct: 141 YTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASVC--AKSLT 198

Query: 455 RCKQLKRAALGR--MATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICG-XQMSEN 625
           + +  +R + GR  +    +     +  L  + + L  +P +DP+  T+ + G   + ++
Sbjct: 199 KREAEERLSEGRKKLEEAFEHGKWVIDDLVNIAKTLRSMPVVDPHIPTLCLVGSPNVGKS 258

Query: 626 QVLLIKXPC*CGSAAICVY---TXSLYVGHTDYKYLRWQV 736
            ++ I      G   +C Y   T  + +GH    + R+QV
Sbjct: 259 SLVRILS---SGKPEVCSYPFTTRGILMGHIVSNHERFQV 295


>01_03_0056 +
           12089404-12090300,12090429-12090581,12090999-12091157,
           12091575-12091734,12092185-12092201,12092682-12092798,
           12092914-12093303
          Length = 630

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 188 KHYK--ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYK 361
           K YK  +S   G+Y+ KV     +    +S  +  FP +D   P ++   N L+D+   K
Sbjct: 423 KRYKELLSDSEGYYVPKVIDELSSKKVLMSEFVPGFP-IDKTDPNWS---NFLFDEPTRK 478

Query: 362 LGLGQLNTARHLIDNVAKDYVRLL 433
             L     AR        DY+R++
Sbjct: 479 FNLIDFGAARDFPKRFVDDYLRMV 502


>08_02_1310 - 26037025-26038074
          Length = 349

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 332 NVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMA 496
           ++L   + Y+LG  +L + + L+DNV  + V  +      Y C +LK+  L  +A
Sbjct: 260 HLLAAAERYELGGLKLLSTKKLLDNVTPENVAGIIVCAETYGCPELKKKCLDYLA 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,199,583
Number of Sequences: 37544
Number of extensions: 429985
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)