Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M14
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    31   0.31 
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    29   0.73 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   1.7  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    28   2.2  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    26   6.8  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   6.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   9.0  

>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 192 GAFGAAYQQEDGINFKEETDAEGNRKGSYSYIDPSGQRKTVNYI 323
           G+F     Q  G+NF E+T +  N + ++S  D  GQR+ VN +
Sbjct: 33  GSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNML 76


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 462 VVAHYIVVPCNLESCIEDRACSQE*ERQLEAQSECDRQRLGIHFC 328
           V AH+ +VP    S +    C+Q+ ER++       + +L   FC
Sbjct: 118 VFAHFDIVPYTTYSILTKYRCAQDKEREIVGLINASQSKLRYKFC 162


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 460 NNTSRKHSPVNYGGKPNEDDGQYY 531
           NN  R + P N   KPN++DG  Y
Sbjct: 115 NNDRRNYPPQNRTAKPNDNDGDDY 138


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 98  ARHGHYDKGGHNKPVHFERSKC 33
           +RH H+ +  H  P  + RSKC
Sbjct: 64  SRHAHFHETVHENPSEYSRSKC 85


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +3

Query: 396 GYTPDP---RYNSPDYKAPQYSAPQQ 464
           GY P P    Y  P+Y  PQ + PQQ
Sbjct: 11  GYAPAPPQQAYGGPNYYPPQQNYPQQ 36


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 281 IYRSEWP-EEDSELHRRQKWIPSRWRS 358
           I ++EW  EED +L    K +P++WR+
Sbjct: 56  IKKTEWSREEDEKLLHLAKLLPTQWRT 82


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 138 GDPKTAAIVQEARYLSGNGAFGAAYQQEDGINFKEETDAEG 260
           GD KT   +Q+A+ +  NG        E+ + F+EE   +G
Sbjct: 111 GDAKT---IQKAKEVGANGFIIVDLPPEEAVGFREECKKQG 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,658
Number of Sequences: 5004
Number of extensions: 48221
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)