Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_M14
(952 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0072 + 17891199-17892279,17893751-17893884,17893966-178941... 32 0.77
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 31 1.3
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 30 2.4
08_01_0178 - 1509100-1511214 30 3.1
08_01_0177 + 1504472-1505033,1505035-1506647 29 7.2
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 29 7.2
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741 28 9.5
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 28 9.5
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 28 9.5
>01_05_0072 +
17891199-17892279,17893751-17893884,17893966-17894115,
17894207-17894524
Length = 560
Score = 31.9 bits (69), Expect = 0.77
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -1
Query: 262 LPSASVSSLKLMPSSCW*AAPNAP-FPLRYRASCTIAAVLGSPAYLGTRLAPSCCWHDTA 86
LPSA+ + S CW A + P F R+RA T + +LG G+ P +H A
Sbjct: 18 LPSAASLQRAALASKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHGSSGLP--VFHPAA 75
Query: 85 TMTKADTISLYILNG 41
T+ + +L G
Sbjct: 76 TVRSDPDLGAAVLGG 90
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 405 PDPRYNSPDYKAPQYSAPQ 461
P P Y SP YK+P Y +PQ
Sbjct: 223 PPPPYQSPPYKSPPYKSPQ 241
>05_05_0254 -
23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 593 STKLSHNIKPSLSRNTTTTQYQPEPSP 673
S+ ++HN + S SR+TT++ QP P P
Sbjct: 523 SSNMAHNDEASSSRSTTSSAAQPSPPP 549
>08_01_0178 - 1509100-1511214
Length = 704
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 99 QQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFGAAYQQ 218
+Q AR P AGD + AA++ E R LS A Y+Q
Sbjct: 568 RQEALARSAPGLAGDARCAALLSELRELSARVASRREYEQ 607
>08_01_0177 + 1504472-1505033,1505035-1506647
Length = 724
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 99 QQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFGAAYQQ 218
+Q AR + AGD + AA+V E R LS A Y+Q
Sbjct: 623 RQEALARSARRLAGDARCAALVSELRELSARVANRREYEQ 662
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 90 VSCQQHEGAR-RVPKYAGDPKTAAIVQEARYLSGNGAFGAA 209
+ C+ EG+ R + GD K + +Q+A + NGA GAA
Sbjct: 254 MDCKNFEGSEERKALFQGDHKNSIHMQQAANAAVNGAIGAA 294
>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
Length = 375
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 536 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTT 646
S NK TT++ N IS S K+ H+++ ++ + T
Sbjct: 169 SILNKMTTEMENPQISQETSEKVIHSVESNVIKTNGT 205
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 28.3 bits (60), Expect = 9.5
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 102 QHEGARRV-PKYAGDPKTAAIVQEARYLSGNGAFGAAYQQEDGI--NFKEETDAEGNRKG 272
+H+ R PK+ A+V++ + + GNG + EDG+ K+ +A + K
Sbjct: 477 EHKADHRTKPKHRSGKTVFAMVKDLKIVFGNGPGSQPIESEDGVYGKLKDTLEACNDLKH 536
Query: 273 SYSYID--PSGQRKTVNYIA 326
D P ++K ++Y++
Sbjct: 537 MEQRGDLHPEPKKKGIHYLS 556
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 283 YE*LPFLLPSASVSSLKLMPS 221
YE LP +LP V+S++LMPS
Sbjct: 180 YEPLPVMLPPPPVASMQLMPS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,737,829
Number of Sequences: 37544
Number of extensions: 365875
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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