Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_M14
(952 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 30 2.8
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 30 2.8
U88168-5|AAM98000.1| 112|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF022970-6|AAB69899.1| 187|Caenorhabditis elegans Hypothetical ... 29 4.9
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 28 8.5
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 28 8.5
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 28 8.5
>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
F29D11.2 protein.
Length = 1153
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 536 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQ-PEPSP 673
S TNKR L + DI+++N + + KP SR T + + P +P
Sbjct: 1049 SKTNKRNANLISTDIAVDNDVNMEEDDKPGPSRPATVRKPRAPRATP 1095
>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
F29D11.2 protein.
Length = 1153
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 536 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQ-PEPSP 673
S TNKR L + DI+++N + + KP SR T + + P +P
Sbjct: 1049 SKTNKRNANLISTDIAVDNDVNMEEDDKPGPSRPATVRKPRAPRATP 1095
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 84 VAVSCQQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFG 203
V + +H G R P+Y+ DP + + + R L +GA+G
Sbjct: 39 VTSTSNEHVGQFRRPRYSADPTSNSTDLQLRPLDAHGAYG 78
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 84 VAVSCQQHEGARRVPKYAGDPKTAAIVQEARYLSGNGAFG 203
V + +H G R P+Y+ DP + + + R L +GA+G
Sbjct: 207 VTSTSNEHVGQFRRPRYSADPTSNSTDLQLRPLDAHGAYG 246
>U88168-5|AAM98000.1| 112|Caenorhabditis elegans Hypothetical
protein K11H12.8b protein.
Length = 112
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 165 QEARYLSGNGAFGAAYQQEDGINFKEETDAEGNRKGS 275
+ ARY G FG+ Q GI T+AEG G+
Sbjct: 28 KSARYGGGQSGFGSRVNQSSGIRSSHWTNAEGATFGT 64
>AF022970-6|AAB69899.1| 187|Caenorhabditis elegans Hypothetical
protein F13A2.5 protein.
Length = 187
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 439 HHNIVRHNNTSRKHSPVNYGGKPNEDDGQYYPEL 540
H +VR N +PVNY EDD Q+ E+
Sbjct: 140 HGAVVRFNPARNAKAPVNYNEGDTEDDIQFLKEI 173
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 536 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQPE 664
SY+++ TTQ + ++ NN+ S++ + R++TTT QP+
Sbjct: 271 SYSSQTTTQHQPQPVAANNNYSTSYHTE----RSSTTTAQQPQ 309
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 545 NKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQPEPSPFXHSYXT 694
N +++Q + I + N ++N S + TTTQ+QP+P ++Y T
Sbjct: 581 NSQSSQHQTKSIPVQNYQSSNYNKSYS---SQTTTQHQPQPVAANNNYST 627
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 536 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQPE 664
SY+++ TTQ + ++ NN+ S++ + R++TTT QP+
Sbjct: 605 SYSSQTTTQHQPQPVAANNNYSTSYHTE----RSSTTTAQQPQ 643
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 536 SYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQPE 664
SY+++ TTQ + ++ NN+ S++ + R++TTT QP+
Sbjct: 855 SYSSQTTTQHQPQPVAANNNYSTSYHTE----RSSTTTAQQPQ 893
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,569
Number of Sequences: 27780
Number of extensions: 291652
Number of successful extensions: 1035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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