Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M14
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    43   5e-06
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   5.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   5.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 42.7 bits (96), Expect = 5e-06
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
 Frame = +3

Query: 138 GDPKTAAIVQEARYLSGNGAFGAAYQQEDGINFKE-----ETDAEGN--RKGSYSYIDPS 296
           G  K A I  +   ++ +G +   ++  +GI+ +E     + D E     +GS SY  P 
Sbjct: 22  GADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPD 81

Query: 297 GQRKTVNYIAGKNGFQAVGDHI 362
           GQ+ ++ Y+A +NGFQ  G HI
Sbjct: 82  GQQVSITYVADENGFQVQGSHI 103


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 45  FKMYRLIVSAFVIVAVSCQQH 107
           F+M+ L +S+FV+V +S  ++
Sbjct: 117 FRMFGLYLSSFVLVCISMDRY 137


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/54 (22%), Positives = 23/54 (42%)
 Frame = +2

Query: 512 KTTDSTILSYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQPEPSP 673
           ++ +  I+S  +  T   +N   + NN+   ++N    L  N    +  P P P
Sbjct: 74  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVP 127


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/54 (22%), Positives = 23/54 (42%)
 Frame = +2

Query: 512 KTTDSTILSYTNKRTTQLHNRDISLNNSTKLSHNIKPSLSRNTTTTQYQPEPSP 673
           ++ +  I+S  +  T   +N   + NN+   ++N    L  N    +  P P P
Sbjct: 74  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVP 127


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 424 LQITRHHNIVR 456
           LQ+T+HHN ++
Sbjct: 123 LQMTKHHNFIK 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,648
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)