Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M11
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.21 
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    29   0.85 
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    29   1.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.5  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   2.0  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    28   2.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   7.9  

>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 496 NCMLRILSVLVRILMAFSNTSAMFTVRLFRASXKEFASFIINWS*FR 356
           N  L  +  LV  ++AFS  SA F +  ++AS   + S + N+S F+
Sbjct: 272 NSKLGFVGCLVIFVVAFSGFSAYFLLNAYQASVPIYTSMLYNYSSFQ 318


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
 Frame = +3

Query: 462 LTNTERIR----SIQFGEP-LPEDVQAAFDN--VLEYIDDIDTANDFYKMGGXAMFPICY 620
           L N+E IR    S    +P + E+V+AA D   V  +I   +  N FY++ G    PI +
Sbjct: 124 LGNSEHIRCCHNSFARSDPFISEEVRAATDEDEVYHFIAYTNINNVFYELDGLQAAPINH 183

Query: 621 GS--ENEKVRALASTVLAELCQNNP 689
           GS  + E      S + A +   +P
Sbjct: 184 GSCTKEEFAEKAVSVIQARIANYDP 208


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 363 NSEXPWCIFSFCGFHCKP*KSLQVSWLP 280
           N E P C+     +HCKP   L V W+P
Sbjct: 666 NVESP-CLMLQHSYHCKPNSKLNVFWMP 692


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = -1

Query: 279 RLIW*DFILTSCRISQSSGNRVILRIIRTHLLETQIFC--EISLVRNGIRN*AVKPTESR 106
           RLIW + +     +S S G    +   +T++ E    C  +IS   N I + + + TE+ 
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424

Query: 105 LVLFKSVIQLIHQIFISRIF 46
             +FK+ +  +    + R F
Sbjct: 425 FTIFKAKLSKVIASVLDRAF 444


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +3

Query: 306 FTVCNGSHKS*RCTRXTRN*DQLMMKDANSLXDALKSLTVNIAEVLLNAIRILTNTERIR 485
           FT  +GS  + R T    N  +  +    S   A+ +L +    + LN  R L     + 
Sbjct: 213 FTYVDGSELTVRRTAYKNNTSKYFVNGVESSFSAVSNL-LKEKGIDLNHKRFLILQGEVE 271

Query: 486 SIQFGEPLPEDVQAAFDNVLEYIDDI 563
           SI   +  P  +    D +LEY++DI
Sbjct: 272 SI--AQMKPRAISEGDDGLLEYLEDI 295


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 211 NNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 309
           ++TI+   + PT+ ++ V PN P  P + Q LL
Sbjct: 7   SSTISPTFSTPTKKRNLVFPNSPITPLHQQALL 39


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 553  IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 428
            +YSR     A  SSG     C+ R+L    RIL+    T+++
Sbjct: 1352 LYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASV 1393


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 553  IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 428
            +YSR     A  SSG     C+ R L    R+L+    T+A+
Sbjct: 1350 LYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAV 1391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,205
Number of Sequences: 5004
Number of extensions: 55020
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)