Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M09
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.87 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   1.1  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    28   2.0  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    28   2.0  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   2.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    27   3.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   4.6  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   6.1  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   6.1  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   6.1  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 491 QAHMRSEEVGPEDEIPADESEYLEEDPDFGDDEPLKREEPQPTVSA 628
           +++ R E+V  E+E   DE+    +D D  +++ L+ E   P  SA
Sbjct: 242 ESYERDEDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSA 287


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 319 IKAFQQHIRVNFIFIHPSVLR 257
           IK+F  H++ NF F H ++LR
Sbjct: 265 IKSFYGHVQANFFFFHETLLR 285


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 347 PNGPNRLICEVCITRLRDACNF 412
           P+  +   C  C+ RLR  CNF
Sbjct: 462 PDSTSHASCTYCVARLRSVCNF 483


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 395 RDACNF--KKQVFECEKKFIDMVARGEFRK 478
           ++  NF  K +VF+ E  FI  + RGEF+K
Sbjct: 435 KEGLNFTGKARVFDAENDFIAALERGEFKK 464


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 272 SKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQTPSLYHDSNITI 144
           S    N  + S   + S+      PS + R TP+  HDS +TI
Sbjct: 294 SPAATNSAISSPFVRKSSSDLEAKPSKKQRSTPAFSHDSPLTI 336


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 413 KKQVFECEKKFIDMVARGEFRKVLIYQAHMRSEEVGPE--DEIPADESEYLEEDPD 574
           +KQVF C   FID     +F  +       +++EV  +  D + +DE E   E+ D
Sbjct: 475 RKQVFHCFLSFIDSYNEEDFSYLSDIGITEKTQEVSSKLPDVLSSDEEEDSAENKD 530


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = +2

Query: 302 LLEC---FDISISQINEGPNGPNRLICEVCITRLRDACNFKKQVFECEKKFIDMVARGEF 472
           LL C   F  SI  +   P+G +  +C      L   C F+K+      +F DMV+  E 
Sbjct: 314 LLSCQNVFQKSIGDVCWSPDGLSLFLCSYDGNVL--VCTFEKE------EFGDMVSDEEI 365

Query: 473 RKVLIYQAHMRSEEVGPED--EIPADESEY 556
            K L    H R   V PE   ++  +E+ Y
Sbjct: 366 SKALAKYGHGRHGIVLPESAKQLELEETAY 395


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 455 VARGEFRKVLIYQAHMRSEEVGPEDE---IPADESEYLEEDPDFGDDEPLKREEP 610
           +A   F   + Y     +EE   EDE   +  DE E  EED + GD+E  K+E P
Sbjct: 185 LAEDLFPNAVKYFTEAMTEEASDEDESVDLEEDEEEEDEEDEE-GDEE--KQEPP 236


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 482 LIYQAHMRSEEVGPEDEIPADESEYLEEDPDFGD 583
           L+ +A  R + V P  ++P DE  +  EDP+F D
Sbjct: 413 LLKEAGYRKQLV-PGQKVPEDEEFHYCEDPEFDD 445


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -1

Query: 468 SPLATMSMNFFSHSNTCFLKLHASRSLVMQTSQISLFGPFGPSFICDILISKHSNSISA* 289
           SP+      F   +NT FL+L  S S   Q S +  F P  P     I +++ S   SA 
Sbjct: 697 SPIGDRKPAFMRRANTDFLELSTSPS--FQRS-VREFEPTRPKLYSSIDVNQRSPLASAK 753

Query: 288 TSFSFIQVYSEPKS 247
           T+ +F      P+S
Sbjct: 754 TNGNFTFHAELPRS 767


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 533 IPADESEYLEEDPDFGDDEPLKREEPQPTVSAEPLQIKGKR 655
           +P+ ESE  EE+ D    EP   EE      A  +  KG +
Sbjct: 223 VPSSESEVSEEESDQEMSEPSPIEEDYNDTKARRITRKGTK 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,636
Number of Sequences: 5004
Number of extensions: 63820
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)