Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M07
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    75   2e-14
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    65   1e-11
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.8  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   4.2  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        26   5.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   7.3  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.7  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   9.7  

>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
 Frame = +2

Query: 347 NFWQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSAAFGWIA 526
           +F +  + S+S++   E+GDKTF +AA++A ++ R+ VFAG+ SAL  M +L    G  A
Sbjct: 45  DFLRSLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAA 104

Query: 527 TVI-PRVYTYYVSAALFAIFGIKMLRDGWK-MDPNEG-QEXLEEVXXEL 664
            ++ PR  T  +   LF IFGIKML +  + MD  E   +  + V  E+
Sbjct: 105 PLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEI 153



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +2

Query: 362 FLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSAAFG-WIATVIP 538
           F+ + ++  VSE GD++      MA       VF GA         L+   G +I+T I 
Sbjct: 203 FIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIK 262

Query: 539 RVYTYYVSAALFAIFGIKMLRDGW 610
                ++   LF  FG+     G+
Sbjct: 263 VHKVMFIGGILFIAFGLVYFYQGF 286


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
 Frame = +2

Query: 371 SLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSAAFGWIAT-VIPRVY 547
           S+S++I  ELGDK+F + A++A ++ R  VF G+  AL FM   +   G  A  + P+  
Sbjct: 30  SISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSI 89

Query: 548 TYYVSAALFAIFGIKMLRDGWKMDPNEGQEXLEEVXXELKR 670
           T+ +   LF IFG+KML++    +  E Q+ LE    ++++
Sbjct: 90  THILGGTLFLIFGVKMLKE--SKEVRESQQSLENEFDKVEK 128



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +2

Query: 350 FWQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSAAFG-WIA 526
           F + F+ + +++ VSELGD++     +M+ K   + VF G     +   +++   G +I+
Sbjct: 175 FSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYIS 234

Query: 527 TVIPRVYTYYVSAALFAIFGIKMLRDGW 610
             I      +    +F IFGI  +  G+
Sbjct: 235 NKIEMYKVLFFGGIVFMIFGILYIFQGF 262


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 526 HRYPKSVHVLRQRGLVRDIRHQNVEGRLENGPKRRS 633
           +R+P    VL   GL R  RH+N EG  ENG + R+
Sbjct: 43  NRFPSLQRVL---GLRRAKRHRNDEGNSENGNRDRT 75


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +2

Query: 317 TTTERTALQGNFWQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAG--AISALVF 490
           T + R   Q ++W  FL+ LS+    +LG K F   +I+++      VFAG  +++ L  
Sbjct: 257 TYSNRLHSQSHWWNMFLSQLSLDGTKDLGPK-FLEQSILSIPDIPEDVFAGHNSLNGLYA 315

Query: 491 MAILSA 508
           +   SA
Sbjct: 316 LVFASA 321


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 459 TMILGCFIAIIAAMKNVLSPSSETMTTDNEARNPCQKLP 343
           TM  GC  A+I     V     E + T N   +P  KLP
Sbjct: 15  TMDPGCLAALIYCALAVPKDEIEILRTANSGMSPTHKLP 53


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 458 VFAGAISALVFMAILSAAFGWIATVIPRVYTYYVSAALFAIFGIKMLR 601
           +F GA+S     A ++A  GW+ T +  + T  VSA    +F  KM R
Sbjct: 405 LFIGALSVGFNYAGVTA--GWLLTFLGIILTPEVSAVTLCLFWNKMTR 450


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 506 AAFGWIATVIPRVYTYYVSAALFAIFGIKMLRDGWKMDPNEG 631
           A F +   ++ R+     ++ L AI G+K L  G K+DP+ G
Sbjct: 117 APFAFSIPLLQRLQDPKNTSLLHAIHGLKGLCKGLKVDPSTG 158


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 522 LPPLSQECTRTTSARPCSRYSASKC 596
           LPP SQ  T TT +   S + +S C
Sbjct: 573 LPPTSQGATSTTVSSASSNFLSSSC 597


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 431 MAMKHPRIIVFAGAISALVFMAILSAAFGW 520
           ++ K+PRI+    A+  L+  + LS  F W
Sbjct: 268 LSAKYPRIVSIPDAVIILLLGSFLSKKFDW 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,101
Number of Sequences: 5004
Number of extensions: 53522
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)