Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_M07
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1347 - 26300295-26300483,26300598-26300657,26300850-263009... 95 6e-20
11_04_0276 + 15691909-15691968,15692070-15692132,15692246-156923... 94 1e-19
11_06_0020 - 19304740-19304790,19304869-19304973,19305063-193051... 79 5e-15
01_01_0854 + 6662533-6662652,6662727-6662996,6663118-6663171,666... 60 2e-09
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937... 51 1e-06
04_04_0985 - 29926952-29927269 29 3.3
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 29 4.4
06_01_0453 - 3218335-3218529,3218744-3218869,3219251-3219358,321... 29 4.4
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111... 29 5.8
07_03_0996 - 23197758-23198705 28 7.7
05_07_0209 + 28420008-28421510 28 7.7
>08_02_1347 -
26300295-26300483,26300598-26300657,26300850-26300933,
26301410-26301495,26302112-26302184,26302287-26302385,
26302526-26302639,26302751-26302807,26302908-26302994
Length = 282
Score = 95.1 bits (226), Expect = 6e-20
Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = +2
Query: 353 WQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSAAFGWIA-T 529
+ F ASLS+++VSE+GD+TF IAA+MAM+HP+ V +GA+SALV M ILS G I
Sbjct: 72 FDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPN 131
Query: 530 VIPRVYTYYVSAALFAIFGIKMLRDGWKMDPNEGQ-EXLEEVXXELK 667
+I R +T + L+A FG+++L W+ D Q + +EEV +L+
Sbjct: 132 LISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLE 178
>11_04_0276 +
15691909-15691968,15692070-15692132,15692246-15692371,
15692515-15692613,15692948-15693020,15693634-15693719,
15694993-15695076,15695312-15695371,15695570-15695758
Length = 279
Score = 94.3 bits (224), Expect = 1e-19
Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = +2
Query: 353 WQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSAAFGWIA-T 529
+ ASLS+++VSE+GD+TF IAA+MAM+HP+ IV +GA+SAL M +LS G I
Sbjct: 69 FDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPN 128
Query: 530 VIPRVYTYYVSAALFAIFGIKMLRDGWKMDPNEGQ-EXLEEVXXELK 667
+I R +T + L+ FG+++L WK DP Q + +EEV +L+
Sbjct: 129 LISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLE 175
>11_06_0020 -
19304740-19304790,19304869-19304973,19305063-19305113,
19305377-19305442,19305722-19305882,19306050-19306146,
19306516-19306563,19307173-19307261,19307447-19307492
Length = 237
Score = 78.6 bits (185), Expect = 5e-15
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Frame = +2
Query: 359 GFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSAAFGWIATVIP 538
GF A+ +++ VSE+GDKTFFIAA++AM++ R +V G+++AL M I+S G I +P
Sbjct: 29 GFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVP 88
Query: 539 RVYT------YYVSAALFAIFGIKMLRDGWKMDPN 625
+ Y + AL A FG K ++D W++ N
Sbjct: 89 AQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDN 123
>01_01_0854 +
6662533-6662652,6662727-6662996,6663118-6663171,
6663723-6663784,6663940-6664008,6664082-6664133,
6664287-6664460
Length = 266
Score = 60.5 bits (140), Expect = 2e-09
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Frame = +2
Query: 344 GNFWQGFLASLSVVIVSELGDKTFFIAAIMAMKHPRIIVFAGAISALVFMAILSA----A 511
G+ GF ++ ++ SELGD+TFFIAA++A ++ I+F G AL M I+S A
Sbjct: 122 GDISTGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLGRA 181
Query: 512 FGWIATVIPRVY-------TYYVSAALFAIFGIKMLRDGWKMDPNEGQEXLEEV 652
F ++ +IP + +++A L +GI L D D + E EEV
Sbjct: 182 FHYVDGIIPFSFGGTDFPVDDFLAACLLVYYGITTLLDAASGDEEKMNEEQEEV 235
>08_02_0766 -
20993207-20993307,20993510-20993612,20993686-20993730,
20993848-20993916,20994463-20994510,20995357-20995404,
20995492-20995551,20996063-20996119,20996403-20996471,
20996511-20996603
Length = 230
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 19/75 (25%)
Frame = +2
Query: 359 GFLASLSVVIVSELGDKTFFIAA-------------------IMAMKHPRIIVFAGAISA 481
GF SL++ ++SE+GDKTFF AA I+AM++PR +V AG +++
Sbjct: 32 GFTKSLAMTVLSEIGDKTFFAAAGTNSYCLFAKNGIFYLAKIILAMRYPRKLVLAGCLTS 91
Query: 482 LVFMAILSAAFGWIA 526
L M LS + GW+A
Sbjct: 92 LTVMTALSVSLGWVA 106
>04_04_0985 - 29926952-29927269
Length = 105
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 449 RIIVFAGAI---SALVFMAILSAAFGWIATVIPRVYTYYVSAALFAIFGI 589
R +FAG + +A++++A+ + G P Y+YY+ + IFG+
Sbjct: 39 RRALFAGGVGKAAAVLYLALFRSPAGLFLRNNPLFYSYYIVLVIVVIFGV 88
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 416 FIAAIMAMKHPRIIVFAGAISALVFMAILSAAFGWIATVIPRVYTYYVSAALFAIFGIKM 595
F+ MA++ I V G+++ + ++IL+A GW A V+ R T ++ A + M
Sbjct: 58 FVREDMALRDAEIEVLTGSMNVFMLVSILAA--GWAADVLGRRGTLVLANAFLMAGALAM 115
>06_01_0453 -
3218335-3218529,3218744-3218869,3219251-3219358,
3219452-3219520,3219649-3219721,3219807-3219907,
3219995-3220231,3220996-3221169,3221261-3221305
Length = 375
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 507 LLSAGLPPLSQECTRTTSARPC 572
LL+ GLPPL CT T R C
Sbjct: 95 LLTGGLPPLGSACTADTVYRAC 116
>04_04_1115 +
31008213-31008707,31009385-31009689,31010848-31011108,
31011193-31011401,31011490-31011783,31011861-31011901,
31011987-31012055,31012164-31012264,31012351-31012435,
31012539-31012637,31012731-31012799,31012909-31013040,
31013128-31013222,31013340-31013421
Length = 778
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 353 WQGFLASLSVVIVSELGD---KTFF--IAAIMAMKHPRIIVFAGAISALVFMAILS 505
W G ++ V+ ++G+ K F IA + ++HP +++F GA++ ++I++
Sbjct: 532 WHGSDVAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGAVTKCPHLSIVT 587
>07_03_0996 - 23197758-23198705
Length = 315
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 529 GGNPAESSR*YRHEHKGRNSSSENYDSWMFHRHYRCYEE 413
GG P ++S YR + ++ +E +DSWMF + + E
Sbjct: 202 GGAPTDASEVYRPDFV--HAGAEEFDSWMFDTAFGPFPE 238
>05_07_0209 + 28420008-28421510
Length = 500
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 449 RIIVFAGAISALVFMAILSAAFGWIATVIPRVYT 550
R++V A +A F A + W+A++ PRV+T
Sbjct: 285 RLLVDQDAAAAASFPAPIDGVLDWVASMNPRVFT 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,390
Number of Sequences: 37544
Number of extensions: 362928
Number of successful extensions: 915
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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