Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_M07
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 334 RSLCGRYMQWRGRRRG 287
           R  C RY++W  R RG
Sbjct: 471 REYCPRYIKWTNRERG 486


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 187 YDIQDVEKKEYMPSCRCLR 243
           +DI+D  KK  +  CRC++
Sbjct: 595 FDIKDKNKKVNVAGCRCVK 613


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 376 VSRHRLRTRRQNVLHSSDNGDETSKN 453
           +   RLR RRQN    +D+ D+  +N
Sbjct: 261 IPTRRLRKRRQNDGEGADDRDDDEEN 286



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 373  VVSRHRLRTRRQNVLHSSDNGDETS 447
            V  RH +R R+++   S D   ETS
Sbjct: 1080 VKERHLMRPRKRDQKQSDDKTKETS 1104


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 496 RHEHKGRNSSSENYD-SWMFHRHYRCYEERFVS*FXXXXX*QRSEES 359
           R  HK  + S E    S+   R YR Y E     F      +RS+ES
Sbjct: 266 RTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRRERERSKES 312


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 437 MKHPRIIVFAGAISALVFMAILSAAFGWIATVIPRVYTYYVSAAL 571
           M+H  +++F    SA  F    + A      V  ++Y Y +S A+
Sbjct: 102 MRHQAVVLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYALSVAV 146


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 437 MKHPRIIVFAGAISALVFMAILSAAFGWIATVIPRVYTYYVSAAL 571
           M+H  +++F    SA  F    + A      V  ++Y Y +S A+
Sbjct: 102 MRHQAVVLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYALSVAV 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,465
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)