Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_L24
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 29 0.88
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 28 1.5
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 2.0
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.6
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 27 4.7
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 27 4.7
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 6.2
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 6.2
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 6.2
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 8.2
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +3
Query: 597 PECXH--CRGCDEDTAEHMFAYCPXCE 671
P C H C C E EH + CP CE
Sbjct: 653 PNCGHAFCSNCMEPFYEHKTSTCPQCE 679
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 590 LPSGRETTVSCEHLRRQEGEASSVAIHPVREDRADHFDGPFP 465
+ S ++ + C H + GE SV + +RE AD D FP
Sbjct: 1 MKSATKSKILCIHGYAESGELFSVKLRALRERMADSVDFYFP 42
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 391 IVRKPTKISFS*STPSIGIMKKCNAP-PSGRRKELQSTLSNRA 266
+VR PTKI STP + + +C P P R +Q L A
Sbjct: 58 LVRTPTKIKEKYSTPRLSPVHRCALPTPRMRLTSIQHQLEEAA 100
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 331 KKCNAPPSGRRKELQSTLSNRARAKLKKSFNSKILF 224
+K N PPS + ST N A L K +SKILF
Sbjct: 212 EKQNIPPSDVKSFFSSTEPNFAFYSLPKDGSSKILF 247
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +3
Query: 537 FLTTQVLTGHCCFPPGRKPKPECXHCRGCDEDTAEHMFAYCPXCEXRTELVYY 695
F T Q L H RKPKP GCDE ++H T L+ Y
Sbjct: 94 FYTQQHLERH--IEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPY 144
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 511 TQSERTGRIISTVRSPWTWSA 449
+ S RTG + S V S WTW++
Sbjct: 50 SHSVRTGLVASAVVSSWTWAS 70
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 337 IMKKCNAPPSGRRKELQSTLSNRARAKLKKSFNSKILFFAN 215
I+ K N SGR + +TLS A + K S ILF N
Sbjct: 194 ILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGN 234
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 26.2 bits (55), Expect = 6.2
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = -1
Query: 426 TPTVVVVFGEYLLLGNRLKFPFPNPRHLSA**RNVT-RLLAGEEKNYSRRFRTARAPN*K 250
TP ++ YLL GN + P P P + V +L K+ + RT R PN
Sbjct: 51 TPILIPNSQSYLLDGNSAQLPRPQPISFTLDQCKVPGYILKSLRKDTTSTERTPRPPN-A 109
Query: 249 SLLIQKYCFSQTLRFNLCVCPCIKNSSI 166
+L +K + L+ N P I NS +
Sbjct: 110 FILYRKEKHATLLKSN----PSINNSQV 133
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 26.2 bits (55), Expect = 6.2
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = -1
Query: 426 TPTVVVVFGEYLLLGNRLKFPFPNPRHLSA**RNVT-RLLAGEEKNYSRRFRTARAPN*K 250
TP ++ YLL GN + P P P + V +L K+ + RT R PN
Sbjct: 51 TPILIPNSQSYLLDGNSAQLPRPQPISFTLDQCKVPGYILKSLRKDTTSTERTPRPPN-A 109
Query: 249 SLLIQKYCFSQTLRFNLCVCPCIKNSSI 166
+L +K + L+ N P I NS +
Sbjct: 110 FILYRKEKHATLLKSN----PSINNSQV 133
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 340 GIMKKCNAPPSGRRKELQSTLSNRARAKLKKSFNSKI 230
G K+ A PS R E TLS ++L K+F+ +I
Sbjct: 482 GSPKEPKAKPSTERPETHRTLSYSRLSELSKTFSPEI 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,759
Number of Sequences: 5004
Number of extensions: 66250
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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