Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L24
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784...    33   0.40 
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    29   3.7  
12_02_0090 + 13493311-13494180                                         29   4.9  
05_01_0206 + 1487034-1489430                                           29   6.5  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   6.5  

>03_06_0074 -
           31476094-31476215,31477803-31478238,31478438-31478485,
           31478569-31479018,31479567-31479681,31480052-31480905
          Length = 674

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 654 TRTCAPPCP---RHSPCSGGTPVSAS 586
           T TCAPP P   RH+P +G TPV+ S
Sbjct: 83  TSTCAPPPPPHARHAPMTGQTPVAGS 108


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 462 QGERTVEMIRPVLSDWVNRHRGRLTFLTTQVLTGHCCF 575
           + E+ VEM+   L+DWV+   G+     T   TG  C+
Sbjct: 187 KAEKNVEMLSEHLADWVSEEDGKKIVFHTFSNTGWLCY 224


>12_02_0090 + 13493311-13494180
          Length = 289

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 639 PPCPRHSPCSGGTPVSAS 586
           P C   SPC+GG P+SA+
Sbjct: 199 PSCQTTSPCTGGMPISAN 216


>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 135 CGLLSPGHCSGCWS 176
           CGLL P H + CWS
Sbjct: 226 CGLLRPNHTAACWS 239


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 237  QKYCFSQTLRFNLCVCPCIKNSSIQNSAPGTEDHKI*KAIICEYLPLFSRFSFWE 73
            +K CF +   +N+   P  KN +I    PG+ D    K +  +  PL    + W+
Sbjct: 1103 EKSCFREPFLWNVLSAPLPKNDAIDGGLPGSADRP--KLLKLDRSPLSQGTTKWK 1155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,105,761
Number of Sequences: 37544
Number of extensions: 494848
Number of successful extensions: 1299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)