Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L24
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical...    31   0.83 
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    31   0.83 
AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm rece...    29   3.4  

>AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12b protein.
          Length = 227

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 465 GERTVEMIRPVLSDWVNRHRGRLTFLTTQVLTG 563
           GE    ++ P LSD +NRH   L FL + VLTG
Sbjct: 163 GEDPYSVVSPCLSDSINRH-SLLFFLVSNVLTG 194


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 465 GERTVEMIRPVLSDWVNRHRGRLTFLTTQVLTG 563
           GE    ++ P LSD +NRH   L FL + VLTG
Sbjct: 416 GEDPYSVVSPCLSDSINRH-SLLFFLVSNVLTG 447


>AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 153 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 95  KRGRYSQMIAFYILWSSVPGALFWMLEFLIHGH 193
           K G Y  ++ ++ L+S V   L W+++  IH H
Sbjct: 37  KLGNYRHLMCYFSLFSMVYAVLDWIVQPFIHSH 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,064,566
Number of Sequences: 27780
Number of extensions: 404114
Number of successful extensions: 1141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)