Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L24
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 120 LLSIFCGLLSPGHCSGCWSF 179
           + ++ C +L  GH SGC  F
Sbjct: 279 IFNLICMMLLIGHWSGCLQF 298


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 120 LLSIFCGLLSPGHCSGCWSF 179
           + ++ C +L  GH SGC  F
Sbjct: 247 IFNLICMMLLIGHWSGCLQF 266


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 499  RTGRIISTVRSPWTWSARR 443
            + G +I ++RS  TW  RR
Sbjct: 1668 KRGTVIRSIRSHSTWDPRR 1686


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 230 TVFRKLCDSTCACVRVL 180
           T+ +KLC    AC R+L
Sbjct: 260 TILKKLCPQEEACFRLL 276


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 230 TVFRKLCDSTCACVRVL 180
           T+ +KLC    AC R+L
Sbjct: 175 TILKKLCPQEEACFRLL 191


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 230 TVFRKLCDSTCACVRVL 180
           T+ +KLC    AC R+L
Sbjct: 494 TILKKLCPQEEACFRLL 510


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 143 KTTKYRKQSFVSTFPFLVGLV 81
           K  KY + + ++T P L+ +V
Sbjct: 87  KNDKYEENTILTTMPLLINVV 107


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 121 CFLYFVVFCPRGTVLDAGVFNTR 189
           CFLY + + P G +   G F  +
Sbjct: 280 CFLYVLSWTPYGVMSMIGAFGNK 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,292
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)