Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L20
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    85   2e-17
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    27   4.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.0  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.0  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    26   7.9  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 3/193 (1%)
 Frame = +1

Query: 169 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 348
           +R K+CD ++E+AR+  D  G  +WPE +  +F   ++ D + +E+  R  TS+P +   
Sbjct: 115 VRNKLCDTIAEIARSIYDCQG--EWPELINVIFNAVNSPDESFRESVFRTITSLPRLLSG 172

Query: 349 RQTENLDVIKGMLISALQPNESMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQV 528
           + +     +  +  + L  + S+ +R  A +A  A IL  + +   +     +L  LM +
Sbjct: 173 QDS----AVTPLFTTGLA-DPSIRVRISAARAYSAVIL--ESKQSTRDQVIPLLPSLMNI 225

Query: 529 IVLSIEAADDDS---ALKVLIELAESTPKFLRPQLETIFQVCIKVVGDKDAEDNWRQLAL 699
           +    +  D D+    L  + E+AE  PK  +P  E++    + ++ DK+ +++ RQ AL
Sbjct: 226 LPPLQQDRDSDNLADCLMAITEIAEVFPKLFKPIFESVIAFGLGIIKDKELDNSARQAAL 285

Query: 700 EAMVTLCETAPAM 738
           E +V   E APAM
Sbjct: 286 ELLVCFSEGAPAM 298


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 574  VLIELAESTPKFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCE 723
            V+I+L       +   LETI+QVC   + D       RQ  L  + TLC+
Sbjct: 877  VVIQLDTDNELLVECALETIYQVC--ALADDFMTSRIRQDLLPRLETLCQ 924


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 264 VYLCQCARSKHQRSWY*NVYICTRCIWK 347
           ++LC+   S H RS+  ++ +C +C+ K
Sbjct: 243 IFLCKVLESSHLRSFAEDLSMCFKCVKK 270


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
 Frame = +1

Query: 358  ENLDVIKGMLISALQPNESMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVL 537
            E L  +  +++S L  + S   RT  VK++G          +++K   DVL  L+ V+  
Sbjct: 1902 EILPTLTSIIVSNLN-SSSNDRRTMCVKSLG---------DLLKKAGFDVLPQLLPVLKQ 1951

Query: 538  SIEAADDDSALKVLIELAE----STPKFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEA 705
             +E+A+    + V I L E    +TP+ L    +       + + D D E   R+ A EA
Sbjct: 1952 GLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLE--VRETAAEA 2009

Query: 706  MVTL 717
              +L
Sbjct: 2010 FDSL 2013


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 214 DS*PVQRLHHKPFFVSXWERSI 149
           D+ P+++  H PFF + W R I
Sbjct: 516 DNAPIKKFEHLPFFEAEWYRVI 537


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +1

Query: 496 FSDVLLPLMQVIVLSIEAADDDSALKVLIELAESTPKFLRPQLETIFQVCIKVVGDKDAE 675
           + D  L L+ ++V + E    D +      L +   K L P+L   + +   ++G +  +
Sbjct: 124 YIDQTLELLCILVQNNELEVVDWSFHAAAYLFKYLRKILAPRLIHTYDILSPLLGKEKQK 183

Query: 676 DNWRQLALEAMVTLCET 726
            +  +   EA+  LC+T
Sbjct: 184 SHVTRFTAEALSFLCKT 200


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 253 LQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNESMA 420
           LQF+F   +A+DP  KEA   +     G     +T     +KG L++ +  +  MA
Sbjct: 126 LQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT----AMKGGLVNGISFDNVMA 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,159
Number of Sequences: 5004
Number of extensions: 76296
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)