Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_L19
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.9
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 3.2
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 27 3.2
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.3
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 26 7.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.9
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + TS+ + +++N S
Sbjct: 2316 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN-TSTPITSSTALNTST 2374
Query: 785 SVQITHAFNRCT 820
S+ + N T
Sbjct: 2375 SITSSSVLNSST 2386
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + TS+ +S +N+S
Sbjct: 540 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN-TSTPITRYSVLNSST 598
Query: 785 SVQITHAFNRCT 820
+ + N T
Sbjct: 599 PITSSTVLNSST 610
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + TS+ + S +N+S
Sbjct: 2376 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN-TSTSITSSSVLNSST 2434
Query: 785 SVQITHAFNRCT 820
+ + N T
Sbjct: 2435 PITSSSVLNSST 2446
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + SS P SS+ NS
Sbjct: 768 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVLN--SSTPITSSSVLNSS 825
Query: 785 S 787
+
Sbjct: 826 T 826
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + TS+ + + +N+S
Sbjct: 2652 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2710
Query: 785 SVQITHAFNRCT 820
+ + A N T
Sbjct: 2711 PITSSTALNTST 2722
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/72 (22%), Positives = 36/72 (50%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + TS+ + +++N S
Sbjct: 2724 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN-TSTPITSSTALNTST 2782
Query: 785 SVQITHAFNRCT 820
+ + N T
Sbjct: 2783 PITSSSVLNSST 2794
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + TS+ + + +N+S
Sbjct: 2880 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2938
Query: 785 SVQITHAFNRCT 820
+ + A N T
Sbjct: 2939 PITSSTALNTST 2950
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +2
Query: 605 VNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNNSD 784
+ S+ +TP+ ++T+ T ++SS L ++ ST+ + TS+ + + +N+S
Sbjct: 2976 ITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 3034
Query: 785 SVQITHAFNRCT 820
+ + A N T
Sbjct: 3035 PITSSTALNTST 3046
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +2
Query: 599 VEVNSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHPXAFSSMNN 778
+ + S+ +TP+ ++T T+ ++SS L ++ ST+ + TS+ + S +N+
Sbjct: 1282 IPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVN-TSTPITSSSVLNS 1340
Query: 779 SDSVQITHAFNRCT 820
S + + N T
Sbjct: 1341 STPITSSTVVNSST 1354
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +3
Query: 363 VDNYLESAACSLLPLPXRTLTVGSGLALLLALMKFMGDSNHSPLGGPYARLPTRAIKNSY 542
VD+ E A + P R LT G+G + + + F D+N +P + +L T ++
Sbjct: 212 VDHQGEIWAMCVSPDAKRCLTAGTGSDVKVWEISFPDDNNFTPTTKAFQQLGTFTRQSRD 271
Query: 543 SLARLSCVLSASFLTFSTAWKLIQI 617
L+ +S ++ F +L+++
Sbjct: 272 RPITLAYDVSNRYVVFQAHDRLLEV 296
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 688 GG*SGGWNVLYGICD*GRCS 629
GG GGWN L GI G CS
Sbjct: 303 GGVRGGWNKLVGIFPGGPCS 322
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 105 WQGFTKKVSLNPQTQPTEFLAG 170
W+GFTK ++ PQT ++F G
Sbjct: 3 WKGFTKALARTPQTLRSKFNVG 24
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 581 FNVLDRVEV--NSNLYAVGTTPLVTNTIQYVPTARSASSCL*ANCMXVCSTIASETSSHP 754
FNV V + +SNL + ++PL I +A S L A + + I S SS
Sbjct: 27 FNVSRSVGLISSSNLESCQSSPLEVGNIYNSTSASEILSTLDAKYITIIGVIGSSNSSIQ 86
Query: 755 XAFSSMNNSDS 787
S+ NS++
Sbjct: 87 DLIDSVGNSNN 97
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -2
Query: 152 GLCLWVKTYFFCETLPEYSFINVSSKHI 69
G C W++ + T+ +F+NV++K++
Sbjct: 347 GFCAWLQELQYSYTVRRNAFLNVANKYL 374
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 426 VGSGLALLLALMKFMGDSNHS-PLGGPYARLPTRAIKNSYSLARLSCVLSASFLTFSTAW 602
VG +ALLL MG + + +P R ++N+ +RLS ASF+
Sbjct: 1014 VGKCVALLLLHFDVMGTKHAGRSMDQQAGDIPARLVRNNSDRSRLSDNELASFVKEEVMH 1073
Query: 603 KLIQI 617
++I++
Sbjct: 1074 RIIEL 1078
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,630
Number of Sequences: 5004
Number of extensions: 63707
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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