Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_L17
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 36 0.006
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.008
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.071
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 33 0.071
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.12
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.22
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.88
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 1.2
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.7
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.7
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 4.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 6.2
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 26 8.2
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 8.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 8.2
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.3 bits (80), Expect = 0.006
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +3
Query: 156 RHLWVGNLPDNIREDRIREHFKRYGRVQNVKLL 254
R++++GNLP+ I ED IRE + +G + +K++
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIV 238
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 153 TRHLWVGNLPDNIREDRIREHFKRYGRVQNVKLLGRTES 269
T LWVGNLP + + F YG V ++++L S
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS 624
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.071
Identities = 10/32 (31%), Positives = 23/32 (71%)
Frame = +3
Query: 150 ETRHLWVGNLPDNIREDRIREHFKRYGRVQNV 245
E+ ++VGN+ + ++ I +HF +YG+V+++
Sbjct: 15 ESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 32.7 bits (71), Expect = 0.071
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 90 HVAMRTGNDS*CGA*SKMVRETRHLWVGNLPDNIREDRIREHFKRYGRVQNVKL 251
H+ +G +S + ++ L V NL D+ RE+ +R+ F+R+G +Q V L
Sbjct: 180 HLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYL 233
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +3
Query: 162 LWVGNLPDNIREDRIREHFKRYGRVQNVKL 251
L+VGNLP + + ++ HFKR G+V +V++
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRI 123
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 156 RHLWVGNLPDNIREDRIREHFKRYGRVQNVKLLGRTESVPT 278
+ ++VG L +I + F R+G V N++++ ++ V T
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGT 45
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 153 TRHLWVGNLPDNIREDRIREHFKRYGRVQNVKL 251
+R L++G + ++RE +R F+R+G VQ++ L
Sbjct: 405 SRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 162 LWVGNLPDNIREDRIREHFKRYGRVQNVKLL 254
L+VGNL + ++EHF + G+++ V+L+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +3
Query: 162 LWVGNLPDNIREDRIREHFKRYGRVQNVKLLGRTES 269
++VGN+P + E+++ + FK+ G V++ +L+ ES
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPES 42
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 162 LWVGNLPDNIREDRIREHFKRYGRVQNVKLLGRTESVPT 278
++VGNLP + + E F+ +G +L R ++ T
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKST 60
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 162 LWVGNLPDNIREDRIREHFKRYGRVQNVKL 251
++VG L N+ E ++ F+ +GR+ N+K+
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 162 LWVGNLPDNIREDRIREHFKRYGRVQNVKLL 254
+++ NLP N+ ED++ E K +G + + +L+
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLI 342
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 162 LWVGNLPDNIREDR-IREHFKRYGRVQNVKL 251
L + NLP +I++ + + HF ++G+V+ +K+
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKI 139
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 153 TRHLWVGNLPDNIREDRIREHFKRYGRVQNVKLL 254
TR++++ LP N ++ + + R+G+V + K +
Sbjct: 295 TRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAI 328
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +3
Query: 162 LWVGNLPDNIREDRIREHFKRYGRVQNV 245
L++ + D + + +IR+HF++YG +++V
Sbjct: 214 LFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 147 RETRHLWVGNLPDNIREDRIREHFKRYGRVQ-----NVKLLGRTESVPTGASVS 293
R + L + +P NI +R+ + KR+G VQ N K L +++ PT +S
Sbjct: 177 RFPKSLLLQYVPSNISSERLFKTLKRHGLVQGVMEMNTKPLKTSKTTPTKKMLS 230
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 150 ETRHLWVGNLPDNIREDRIREHFKRYGRVQNVKL 251
+++ L V N+ + E R+R F+ YG++ V L
Sbjct: 872 KSKSLGVTNVDGTVNEARLRSLFESYGKLYRVVL 905
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,534
Number of Sequences: 5004
Number of extensions: 51806
Number of successful extensions: 156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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