Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_L15
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711... 39 0.005
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 38 0.014
03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124... 33 0.31
09_04_0441 + 17626285-17626620,17626726-17626812,17627195-176272... 31 0.94
03_03_0222 - 15559996-15560188,15561120-15561150,15561645-155617... 31 1.2
03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412 31 1.2
09_01_0057 - 916973-917287,917371-917495,917587-918241 29 5.0
07_03_0864 - 22115997-22116056,22116293-22116505,22116863-221172... 29 5.0
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 28 8.8
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 8.8
>06_01_0922 -
7113781-7113942,7114093-7114235,7115305-7115506,
7115590-7115685,7117053-7117139,7117237-7117638
Length = 363
Score = 39.1 bits (87), Expect = 0.005
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 7 VALACLSLAAKSEDKFSRAPTLKTLSRISGVQLC--GKTFRQLEWMVGQHVRWRLLSPTP 180
+ +ACLSLAAK E+ S AP L L +I G + +T +++E +V + WRL S TP
Sbjct: 172 LCVACLSLAAKMEE--SSAPPLLDL-QIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTP 228
Query: 181 VTFAALLA 204
F A
Sbjct: 229 FAFVDFFA 236
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +1
Query: 7 VALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGKTFRQLEWMVGQHVRWRLLSPTPVT 186
+++AC+S+AAK E+ ++P L G C + R++E +V + WR+ + TP
Sbjct: 149 LSIACVSVAAKMEE--YQSPALSEFDAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFD 206
Query: 187 F 189
F
Sbjct: 207 F 207
>03_05_0329 -
23211636-23211857,23211946-23212079,23212170-23212476,
23212760-23213113
Length = 338
Score = 33.1 bits (72), Expect = 0.31
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 7 VALACLSLAAKSEDKFSRAPTLKTLSR---ISGVQLCGKTFRQLEWMVGQHVRWRLLSPT 177
+A+AC+SLAAK E+ RAP L G + R++E +V + WR+ + T
Sbjct: 129 LAVACVSLAAKMEE--YRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVT 186
Query: 178 PVTFAALLA 204
P + L+
Sbjct: 187 PFDYLPCLS 195
>09_04_0441 +
17626285-17626620,17626726-17626812,17627195-17627293,
17627431-17627632,17627735-17627832,17628050-17628298
Length = 356
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 7 VALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGKTFRQLEWMVGQHVRWRLLSPTPVT 186
+A+ACLSLAAK E+ +L KT +++E +V ++WR+ + TP +
Sbjct: 151 LAVACLSLAAKMEET-DVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFS 209
Query: 187 F 189
+
Sbjct: 210 Y 210
>03_03_0222 -
15559996-15560188,15561120-15561150,15561645-15561701,
15563059-15563134,15563220-15563347,15563459-15563660,
15563781-15563879,15564032-15564124,15564539-15564877
Length = 405
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 13 LACLSLAAKSEDKFSRAPTLKTLSRISGVQLC-GKTFRQLEWMVGQHVRWRLLSPTPVTF 189
+ACLSLAAK E+ + AP L + + +T ++E +V ++WR+ + TP T+
Sbjct: 156 VACLSLAAKMEE--TAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTY 213
>03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412
Length = 342
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +1
Query: 7 VALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGKTFRQLEWMVGQHVRWRLLSPTPVT 186
+++ACLSLAAK E++ R P L + C R +E +V ++W++++ TP +
Sbjct: 119 LSVACLSLAAKVEER--RPPRLPEFK--LDMYDCASLMR-MELLVLTTLKWQMITETPFS 173
Query: 187 F 189
+
Sbjct: 174 Y 174
>09_01_0057 - 916973-917287,917371-917495,917587-918241
Length = 364
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Frame = +1
Query: 10 ALACLSLAAKSEDKFSRAPTLKTLSRISGVQLC--------GKTFRQLEWMVGQHVRWRL 165
A+AC++LAAK E+ +R P L L + + KT R++E +V + WR+
Sbjct: 128 AVACVALAAKVEE--TRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRM 185
Query: 166 LSPTPVTF 189
TP+++
Sbjct: 186 HPVTPLSY 193
>07_03_0864 -
22115997-22116056,22116293-22116505,22116863-22117291,
22117407-22117508,22117599-22117691,22117802-22117996
Length = 363
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 7 VALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGKTFRQLEWMVGQHVRWRLLSPTPVT 186
+A++CL+LAAK + + A + + R +++E MV + WR S TP+
Sbjct: 107 LAISCLTLAAKMQR--AAAISAADIQRGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLA 164
Query: 187 F 189
F
Sbjct: 165 F 165
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 98 SSSAGRHSDSSNGW*ASTCDGGYCHRLR 181
SS + R+ D S+GW CDGG R R
Sbjct: 17 SSDSQRNGDPSDGWIHPPCDGGRRPRRR 44
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -1
Query: 728 EXFPGXXRXXXXXADXWSNLKXXTDLRSTFVCTHSLWRCSKCWTPXEVWRFG 573
E P R D W +K DLR T S CS+ ++WR G
Sbjct: 1197 EDCPALARRCRRGGDYWEKVKDIPDLRVTRTLA-SFLSCSEILQHIQIWRPG 1247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,101,393
Number of Sequences: 37544
Number of extensions: 257730
Number of successful extensions: 691
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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