Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L15
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +1

Query: 490 KSRDAADSEI--DQGYDSARTSPNLTPCTSP 576
           KS D   +E   D GY  A   P   PCT P
Sbjct: 287 KSSDYGFTECRCDPGYFRAEKDPKKMPCTQP 317


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 276 TVPSESSNKLRMPCRQV 226
           T P   S+ +R+PCR+V
Sbjct: 378 TTPGLDSDGIRLPCREV 394


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 158 HRTCWPTIHSSCLNV 114
           H  C P IH SC+ V
Sbjct: 477 HSRCPPEIHKSCICV 491


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 158 HRTCWPTIHSSCLNV 114
           H  C P IH SC+ V
Sbjct: 477 HSRCPPEIHKSCICV 491


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 203 ANSAANVTGVGDNSLHRTCWPT-IHSSC-LNVFPQSWTPLILDR 78
           AN A+   G+  ++L++      I  +   N  P +W+P  LDR
Sbjct: 484 ANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDR 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,768
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)