Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L12
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    30   0.50 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   2.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   6.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   8.2  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   8.2  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   8.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   8.2  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 315 HLEYHEGERREIDTNSPGALASRESSLGGDQDVRVA 422
           H++ HE  +  ++T +PG ++S  + L  DQ   V+
Sbjct: 199 HIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVS 234


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 372 LASRESSLGGDQDVRVAGLPG 434
           LA++  + GGD+++RVA  PG
Sbjct: 41  LAAKNVNAGGDEEIRVANYPG 61


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 695 EKXLHRLREPLHEAXKLN 748
           EK LH+L EPLH+  + N
Sbjct: 562 EKSLHKLSEPLHDDSRQN 579


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 436 NPGSPATRTSWSPPRLLSLDA-RAPGEFVSISLRS 335
           NP  P +RTSW  P+     +  APG   S S  S
Sbjct: 765 NPAFPQSRTSWMMPQSFDTSSLNAPGAKDSSSFSS 799


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +1

Query: 325 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKF 504
           +++E+ E+ ++   E + ++K   E  +     +   ++L+  F    QLG    P+DK 
Sbjct: 538 LSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDK- 596

Query: 505 QALMRTV 525
           QA++  V
Sbjct: 597 QAVLDAV 603


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +1

Query: 199  QGRDPDLEAREHEAREYM-----LHLDRATGLRKNRASLAEWEYTSNITKENEEKSIQTH 363
            Q R   L A E + R+ +     LH D+    +  +A+  E  Y   + KE      Q +
Sbjct: 1034 QKRTVLLNAEERKVRDLLQKVMTLHTDKEAKRKAKKAAEHE-RYHKRMQKEE-----QAY 1087

Query: 364  LELSRQEKAAW 396
            +E  R+EKA W
Sbjct: 1088 IEKKREEKAEW 1098


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +1

Query: 292 ASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQD 426
           +SL+ W      +KE ++ ++ +++++SR    A     ++G+Q+
Sbjct: 187 SSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,509
Number of Sequences: 5004
Number of extensions: 56808
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)