Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L12
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arre...    32   0.47 
D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C prot...    32   0.47 
D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C prot...    32   0.47 
U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf (tbp-associ...    29   4.4  

>U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arrest
           at two-fold protein10 protein.
          Length = 161

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 409 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVS 528
           M+G  QDF + TLR++ +K+   G   L  D+F AL+ TV+
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVA 84


>D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 409 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVS 528
           M+G  QDF + TLR++ +K+   G   L  D+F AL+ TV+
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVA 84


>D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 409 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVS 528
           M+G  QDF + TLR++ +K+   G   L  D+F AL+ TV+
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVA 84


>U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 11.1
           protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 331 KENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYS 468
           +ENE   ++T + LS   +   E  + Y    FQ  T+RR+  +Y+
Sbjct: 227 EENELSRLKTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYT 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,860
Number of Sequences: 27780
Number of extensions: 320133
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)