Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_L10
(903 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 38 0.010
AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 38 0.010
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.030
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 33 0.28
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 33 0.28
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 33 0.28
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 33 0.28
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 30 2.6
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 3.4
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 4.5
AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical... 29 4.5
AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical ... 29 4.5
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 29 6.0
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 28 7.9
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 7.9
AL132860-16|CAB60516.1| 497|Caenorhabditis elegans Hypothetical... 28 7.9
AL132860-15|CAB60499.1| 512|Caenorhabditis elegans Hypothetical... 28 7.9
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 7.9
>AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6b protein.
Length = 343
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 167 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRC*LRHMELRKNR 346
PR DC ++ C+KG+ C F H+ + E +C GKC+ R R + R
Sbjct: 2 PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRA-CRFLHTRPRN 59
Query: 347 KQIP 358
++P
Sbjct: 60 DELP 63
>AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6a protein.
Length = 413
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 167 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRC*LRHMELRKNR 346
PR DC ++ C+KG+ C F H+ + E +C GKC+ R R + R
Sbjct: 2 PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRA-CRFLHTRPRN 59
Query: 347 KQIP 358
++P
Sbjct: 60 DELP 63
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.030
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +2
Query: 185 CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRC*LRHMELRKNRKQIPCY 364
C + C KGD C F HE + C+++ C RH++ K P Y
Sbjct: 82 CKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWY 141
Query: 365 WENQPGGCRK-IHCPFMHK 418
G CR +C H+
Sbjct: 142 ---DRGFCRHGPYCKHRHR 157
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 209 CTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRC*LRH-MELRKNRKQIPCYWENQPG 382
C G C RH +C W +G C +C H +L K + C++ ++
Sbjct: 63 CPFGPTCPLRHIDGEKA--VVCKHWLRGLCKKGDQCEFLHEYDLTKMPE---CFFFSKYS 117
Query: 383 GCRKIHCPFMHKNPEAR 433
C CPF H +PE +
Sbjct: 118 ACSNRECPFRHIDPETK 134
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 209 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 298
CTKG+NC F +E A G T C A + KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 209 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 298
CTKG+NC F +E A G T C A + KC
Sbjct: 256 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 287
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 209 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 298
CTKG+NC F +E A G T C A + KC
Sbjct: 252 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 283
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 209 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 298
CTKG+NC F +E A G T C A + KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +2
Query: 185 CYFYYYSTCTKGDNCVFRHE-PSALGCETMCTAWQQGKC-TDKRC*LRHMELRKNRKQIP 358
C F+ C GDNC++ H+ +L +C + C +C + H E P
Sbjct: 171 CKFFREGYCRDGDNCLYSHQAEDSLRRPVLCNFYANSFCKKGLQCLMLHGE-------FP 223
Query: 359 CYWENQPGGCRKIHCPFMH 415
C G C C F H
Sbjct: 224 CK-SFHKGQCNHDPCRFSH 241
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 398 HCPFMHKNPEARTDGIAPSQPAPP-VHACLN--ESVVEQPPMGAIPPPGCARPGAAS 559
H P + PE+R D PAP VH + V++Q M IPP A PGA S
Sbjct: 699 HQPALVTQPESRPDPNLIILPAPTDVHPPKSPVHHVIKQESMKDIPPGSPASPGAWS 755
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +2
Query: 458 PAPPVHACLNESVVEQPPMGAIPPPGCARPGAASVAATKTSGAG 589
P PP A L +P GA P A P AA AA GAG
Sbjct: 273 PCPPRSAALGAGGGAEPA-GAAPEAAAAAPEAAPEAAPAAEGAG 315
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 603 PATCYPAPLVFVAATEAAPGRAQPGGGMAPIGGCSTT 493
PA+ P +F AAT AP A P GG+ G +TT
Sbjct: 453 PASTAPTGGLFGAATTTAPAAAAPTGGL--FGAATTT 487
>AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical
protein Y24D9A.1b protein.
Length = 487
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 431 RTDGIAPSQPAPPVHACLNESVVEQPPMGAIPPPGCARPGAASVAATKTS 580
R +AP P PPV ++ Q G +PP RP ++S ++S
Sbjct: 428 RAHNLAPPPP-PPVQVVTPQTTSSQTETGPLPPKRTKRPESSSPQLERSS 476
>AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical
protein Y24D9A.1a protein.
Length = 670
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 431 RTDGIAPSQPAPPVHACLNESVVEQPPMGAIPPPGCARPGAASVAATKTS 580
R +AP P PPV ++ Q G +PP RP ++S ++S
Sbjct: 428 RAHNLAPPPP-PPVQVVTPQTTSSQTETGPLPPKRTKRPESSSPQLERSS 476
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Frame = +1
Query: 460 CPTCSCLPKRECGGAATDGSHPAPWLC---------PPRCRFCGS 567
C C C G GS A W C PP C FC S
Sbjct: 126 CQKCGINVHESCYGTLPGGSDDASWYCEPCLYGLTLPPHCEFCPS 170
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -1
Query: 654 VHGQRRERSASVVTRHNPATCYPAPLVFVAATEAAPGRAQPGGGMAPIGGCST 496
+ G E +A+ + HN + F+A A PGR G GG T
Sbjct: 236 IGGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGT 288
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 440 GIAPSQPAP---PVHACLNESVVEQPPMGAIPPP 532
G+ P P P P+ L + PP+G IPPP
Sbjct: 768 GVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPP 801
>AL132860-16|CAB60516.1| 497|Caenorhabditis elegans Hypothetical
protein Y56A3A.17b protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 624 SVVTRHNPATCYPA--PLVFVAATEAAPGRAQPGGGMAPIGGCSTTL 490
SV+T+ PA PLV AA A RA GGG P+GG + +
Sbjct: 134 SVITKETPAPLAKTAEPLVAPAAPATARKRAIRGGG--PLGGAESVV 178
>AL132860-15|CAB60499.1| 512|Caenorhabditis elegans Hypothetical
protein Y56A3A.17a protein.
Length = 512
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 624 SVVTRHNPATCYPA--PLVFVAATEAAPGRAQPGGGMAPIGGCSTTL 490
SV+T+ PA PLV AA A RA GGG P+GG + +
Sbjct: 134 SVITKETPAPLAKTAEPLVAPAAPATARKRAIRGGG--PLGGAESVV 178
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 440 GIAPSQPAP---PVHACLNESVVEQPPMGAIPPP 532
G+ P P P P+ L + PP+G IPPP
Sbjct: 768 GVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPP 801
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,527
Number of Sequences: 27780
Number of extensions: 476200
Number of successful extensions: 1628
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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