Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L10
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   8.8  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 52  YNFVFQKLLFSINYFHELKV 111
           YN  ++KL ++INY  ++ V
Sbjct: 344 YNNNYKKLYYNINYIEQIPV 363


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -2

Query: 587 QHHLSLLLPQKRHRGGHSQGAGWLPSVAAPPH 492
           QHH S   P +     H  G   +     PPH
Sbjct: 320 QHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPH 351


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 46  FEYNFVFQKLLFSINYFHELKV 111
           + YN   +KL ++INY  ++ +
Sbjct: 98  YNYNNNCKKLYYNINYIEQIPI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,135
Number of Sequences: 438
Number of extensions: 6612
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)