Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L09
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    37   0.004
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    29   1.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   4.5  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   4.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   7.8  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 25/77 (32%), Positives = 34/77 (44%)
 Frame = +3

Query: 435 TAPFTTLMASTLRPWRTTESRTVR*SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTT 614
           T  FTT +A+T+ P     +     S S A   T   +  + + T + PPPS  S   TT
Sbjct: 23  TPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPST-SHNSTT 81

Query: 615 LTGSKLRSLRRPPTVPP 665
            T     S+    TVPP
Sbjct: 82  TTVPPTTSMNTTTTVPP 98


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/90 (26%), Positives = 45/90 (50%)
 Frame = +1

Query: 16  EHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVGFQDITLTPA 195
           ++E+ + ++ F  +L +  +IGP  DVPA D+G     +  +   Y +        +T  
Sbjct: 125 DNEIRRFSQAFMRQLFR--YIGPQTDVPAGDIGVTGFVVMHMFGEYKRLRNEYSGVVTG- 181

Query: 196 SLANLLTRXGIHGRVSATGRGVFHGLENFI 285
              ++LT  G + R  ATG GV + +++ I
Sbjct: 182 --KHMLT-GGSNIRPEATGYGVVYYVKHMI 208


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 57  TCQKRIHWAWRG 92
           TC +R+ WAWRG
Sbjct: 662 TCDRRMVWAWRG 673


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 508 YRTVLDSVVLQGLRVDAIRVVNGAVVLDNSDASG 407
           +++++      GLR+DA++++N     D  DA+G
Sbjct: 214 FKSLISKYDFDGLRIDAVKMMNYTFFPDFVDATG 247


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 128  SRSPVPMSGAGTSTPGPMNPF 66
            + SP P S  GTSTP P + F
Sbjct: 1003 NNSPQPASMFGTSTPAPSSAF 1023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,126
Number of Sequences: 5004
Number of extensions: 66434
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)