Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_L09
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 128 6e-30
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 124 7e-29
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 106 1e-27
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 37 0.024
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 31 1.5
04_03_0634 - 18211054-18212169,18213449-18214219 30 2.0
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 30 2.0
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 4.7
03_02_0328 - 7487759-7488340 29 4.7
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 28 8.3
04_03_0690 + 18751601-18753667 28 8.3
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 128 bits (309), Expect = 6e-30
Identities = 59/141 (41%), Positives = 88/141 (62%)
Frame = +2
Query: 335 GKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVG 514
G TF++QGFGNVG R + G I + + GSI N +G++ AL +R E G +
Sbjct: 206 GSTFVIQGFGNVGSWAARIIHEKGGKVIALGDVTGSIRNKNGLDIPALMKHRNEGGALKD 265
Query: 515 FPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADXILID 694
F A+ + +L +CD+L+P A+ V+N++NA ++AK I EAAN PT P AD IL
Sbjct: 266 FHDAEVMDSSELLVHECDVLIPCALGGVLNRENAPDVKAKFIIEAANHPTDPEADEILAK 325
Query: 695 RNILVIPDLYINAGGVTVSFF 757
+ + ++PD+Y N+GGV VS+F
Sbjct: 326 KGVTILPDIYANSGGVIVSYF 346
Score = 64.1 bits (149), Expect = 1e-10
Identities = 40/100 (40%), Positives = 55/100 (55%)
Frame = +1
Query: 22 ELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVGFQDITLTPASL 201
ELE++TR FT ++ IG DVPAPDMGT + M+WI D Y+K G +T
Sbjct: 116 ELERLTRVFTQKI--HDLIGAHTDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVT---- 169
Query: 202 ANLLTRXGIHGRVSATGRGVFHGLENFINEANYMSMIGTT 321
+ G GR +ATGRGV + E + E + S+ G+T
Sbjct: 170 GKPIDLGGSLGRDAATGRGVMYATEALLAE-HGKSISGST 208
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 124 bits (300), Expect = 7e-29
Identities = 57/141 (40%), Positives = 88/141 (62%)
Frame = +2
Query: 335 GKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVG 514
G TF++QG GNVG + + + G + V + G+I N GI+ AL +R E G++
Sbjct: 206 GSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLED 265
Query: 515 FPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADXILID 694
F GA+ + +L +CD+LVP A+ V+N++NA ++A+ I E AN PT AD IL
Sbjct: 266 FYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPTDTEADEILAK 325
Query: 695 RNILVIPDLYINAGGVTVSFF 757
+ ++V+PD+Y N+GGV VS+F
Sbjct: 326 KGVIVLPDIYANSGGVVVSYF 346
Score = 64.5 bits (150), Expect = 1e-10
Identities = 40/100 (40%), Positives = 55/100 (55%)
Frame = +1
Query: 22 ELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVGFQDITLTPASL 201
ELE++TR FT ++ IG DVPAPDMGT + M+WI D Y+K G +T
Sbjct: 116 ELERLTRVFTQKI--HDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVT---- 169
Query: 202 ANLLTRXGIHGRVSATGRGVFHGLENFINEANYMSMIGTT 321
+ G GR +ATGRGV + E + E + S+ G+T
Sbjct: 170 GKPIDLGGSLGRDAATGRGVMYATEALLTEYS-ESISGST 208
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 106 bits (254), Expect(2) = 1e-27
Identities = 50/115 (43%), Positives = 73/115 (63%)
Frame = +2
Query: 335 GKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVG 514
G+ F++QGFGNVG + + AG I + + G++ N +G++ L + EN + G
Sbjct: 206 GQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTGAVKNSNGLDIAKLMKHSSENRGIKG 265
Query: 515 FPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAAD 679
F G A + ++L E+CD+L+PAA+ VINKDNA+ I+AK I EAAN PT P AD
Sbjct: 266 FDGGDAIDPRSLLTEECDVLIPAALGGVINKDNANEIKAKYIIEAANHPTDPEAD 320
Score = 63.3 bits (147), Expect = 2e-10
Identities = 39/92 (42%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +1
Query: 22 ELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVGFQDITLT--PA 195
ELE++TR FT ++ IG DVPAPDMGT + M+WI D Y+K G+ +T P
Sbjct: 116 ELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPV 173
Query: 196 SLANLLTRXGIHGRVSATGRGVFHGLENFINE 291
L L GR +ATGRGV E + E
Sbjct: 174 DLGGSL------GRDAATGRGVLFATEALLAE 199
Score = 35.1 bits (77), Expect(2) = 1e-27
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 683 ILIDRNILVIPDLYINAGGVTVSFF 757
IL + +L++PD+ N+GGVTVS+F
Sbjct: 354 ILSKKGVLILPDILANSGGVTVSYF 378
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 36.7 bits (81), Expect = 0.024
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 16 EHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVG 168
E E+ + + F EL + ++GP D PA D+G G REM ++ Y + G
Sbjct: 328 ESEIMRFCQSFMDELYR--YLGPDQDFPAEDVGVGPREMGYLFGQYRRLSG 376
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 386 RYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFPGAKA 532
R LV AGA +G DG +G+ +ALE++ ++ TVV P +++
Sbjct: 664 RVLVAAGAAEVGTHRSDGQRLRCEGLTEEALEEF-LDGVTVVRGPQSRS 711
>04_03_0634 - 18211054-18212169,18213449-18214219
Length = 628
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +3
Query: 579 PPPSNRS*TRTTLTGSKLRSLRRPPTVPP 665
PP S RS TT T S +R+ RPPT PP
Sbjct: 14 PPSSPRSGATTTTTTS-VRARPRPPTAPP 41
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 531 PTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPTVPPHL 671
PT A T R+ PP S+ +R T S + PP PPHL
Sbjct: 484 PTFAATPVARAMALTAPPTSSPPGSRLRCTASARATSPPPPRHPPHL 530
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 222 WHPRQSFSHGQGRIPRLGELHQRSQLHEHDRYNPR 326
+HP S SHG + QL EH YNPR
Sbjct: 303 YHPVFSVSHGTSASSSSQHPYMARQLLEHPEYNPR 337
>03_02_0328 - 7487759-7488340
Length = 193
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 555 TRSATFLYPPPSNRS*T--RTTLTGSKLRSLRRPPTVPP 665
T+ ATF YPPP + R + ++ R RR P+ PP
Sbjct: 51 TKYATFPYPPPPQQPPRSGRASTPSTRQRDRRRKPSRPP 89
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 335 GKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVG 514
G +V G G VG H L+R+G + +++ D ++ +L + + VG
Sbjct: 95 GSFVVVIGLGGVGSHAASMLLRSGVGRLLLVDF-------DQVSLSSLNRHAVATRDDVG 147
Query: 515 FPGAKAYEGE-NMLYEKCDI 571
P A + +M+Y +C I
Sbjct: 148 TPKALCLKKHFSMIYPECQI 167
>04_03_0690 + 18751601-18753667
Length = 688
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = -1
Query: 203 ASDAGVSVMS*KPTVFA*VSAIQDISRSPVPMSGAGTSTPGPMNP---FLASSRVKRR 39
A+D + ++S F+ ++A D+ SP+P SGAG + P P P F A+ R+ R+
Sbjct: 50 AADDMIRILSGFDHRFSSITA--DLFPSPLPSSGAGPTPPPPPPPRGAFEAAERLIRQ 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,605,294
Number of Sequences: 37544
Number of extensions: 545002
Number of successful extensions: 1601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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