Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L06
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   102   8e-23
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    30   0.51 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   2.7  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   3.6  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   6.3  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   8.3  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  102 bits (244), Expect = 8e-23
 Identities = 46/71 (64%), Positives = 57/71 (80%)
 Frame = +1

Query: 517 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 696
           L IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+
Sbjct: 139 LGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFS 198

Query: 697 PEILDIKPEDL 729
           PEILD+  EDL
Sbjct: 199 PEILDVSEEDL 209



 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 43/86 (50%), Positives = 63/86 (73%)
 Frame = +2

Query: 122 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 301
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 302 DNNPALEKLLPHIKGNVGFVFTRGDL 379
           ++ P LE+LLP ++GNVGFVFT  DL
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADL 93



 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 29/54 (53%), Positives = 37/54 (68%)
 Frame = +3

Query: 384 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQXSFYPYQDFKG 545
           EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQ    P +  +G
Sbjct: 95  EVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRG 148


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 252 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 359
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 318 RAGLLSRWSLMALRIIVFFPMSTILEPR 235
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 301 GQQSSPRETVATHQGQRWLRVHPRRPRLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTP 480
           G  SS R   A +           +   ++  N   T+S + L L+ L     +  P+ P
Sbjct: 306 GDFSSARTVAADNNSLLQATTESAKSNSKTSANASNTQSAMDL-LIDLDIGSDAQSPSLP 364

Query: 481 ASVQRRPLSSRXLSIPTKISKGTIE 555
           AS  + P SS  +   ++   GT+E
Sbjct: 365 ASSSQMPTSSFNMESLSQSLLGTVE 389


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +1

Query: 415 SKLQLVLVPLPHCQSSFPPTTPASVQR--RPLSSRXLSIPTKISKGTIEIINDVHILKPG 588
           S  Q +  P  H   SF P+      R   PL S   S  + ++     ++ND       
Sbjct: 15  SFFQSLTTPNRHADPSFRPSRREKQSRLPTPLQSVAASAYSGVNASQTGLLNDSRANSVT 74

Query: 589 DKVGASEATLLNMLNISPFSYGLV 660
           +   +S  + + + NISP   G V
Sbjct: 75  NLPNSSNTSQVGLNNISPAPVGYV 98


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 7   SHFEFCPARKSCVLSCP*ISSKSLRH 84
           S  E  PA++   LSCP + SK + H
Sbjct: 486 SENEIVPAKERAYLSCPKVWSKIINH 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,715,498
Number of Sequences: 5004
Number of extensions: 78001
Number of successful extensions: 231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)