Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_L05
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0181 - 23363893-23364458,23364548-23364626,23364749-233648...    29   5.1  
06_03_0378 + 20070955-20071354,20071483-20072132                       29   6.7  

>04_04_0181 -
           23363893-23364458,23364548-23364626,23364749-23364818,
           23367534-23367538
          Length = 239

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 558 VVSGQAAPPAPWRXGSGEVWRTXTAEDRRRPCXIYRSXAPLA 683
           VV+  AAP A    G+GEV  +  A     P   YRS +PLA
Sbjct: 147 VVASHAAPAAALWPGAGEVGGSWAASYSAHPSPCYRS-SPLA 187


>06_03_0378 + 20070955-20071354,20071483-20072132
          Length = 349

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 573 AAPPAPWRXGSGEVWRTXTAEDRRRPCXIYRSXA 674
           AA    WR    ++ R   A  R+ PC IYRS A
Sbjct: 20  AAVCTAWRAAYRDLRRRGIAASRQTPCLIYRSAA 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,770
Number of Sequences: 37544
Number of extensions: 263684
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)