Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_L01
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 41 2e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 40 4e-04
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.27
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 30 0.47
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 29 0.61
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 29 1.1
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 28 1.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.9
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 28 1.9
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 2.5
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 4.3
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 4.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.3
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.7
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.6
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 7.6
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 7.6
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 26 7.6
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 7.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 7.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 7.6
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 7.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 41.1 bits (92), Expect = 2e-04
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 7/151 (4%)
Frame = +3
Query: 195 APPLTRPDQAAMDKLTSLHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMP---MGVPPF 365
APP+ +P AA + S + P VP PA P VP + A P+P +GVPP
Sbjct: 1158 APPVPKPSVAA----PPVPAPSSGIPP--VPKPAAGVPP-VPPPSEAPPVPKPSVGVPPV 1210
Query: 366 RP---LPPKEDTLKVLPITSSTRKNYAPLQIPESKGPGLAYQSEIYPQSHNQISKMVSQM 536
P PP LP P+ P S+ P ++ P H+ S +
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSS 1270
Query: 537 TAVQYAPXSQNQTHPXS-Y*IHSTGVSTLKS 626
+ AP + + S H T S+ KS
Sbjct: 1271 SMASAAPARTSVSRSKSKAERHETSTSSRKS 1301
Score = 30.3 bits (65), Expect = 0.35
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
Frame = +3
Query: 54 LTNLDPSRRRSVNIKNGAPPNLVAD--TSRLNAKQEKRAKQNRIMMRPVAPPLTRPDQAA 227
LT R++ + APP++ S + + ++ P++ P++ A
Sbjct: 948 LTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAP 1007
Query: 228 MDKLTSLHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPPF-----------RPL 374
+ ++ + + S P+ +P+ A P VP+ P+P PP P+
Sbjct: 1008 LARVPPVPKLSSKAPPVPLPS-ADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066
Query: 375 PPKEDTLKVLPITSSTRKNYAPLQIPESKGPGLA 476
P + +P S AP IP P +A
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA 1100
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.9 bits (89), Expect = 4e-04
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = +3
Query: 105 APPNLVADTSRLNAKQEKRAKQNRIMMRPVAPPLTRPDQAAMDKLTSLHRRVSTMQPIVV 284
APP ++ +Q +R + P APP P ++A L L T P V
Sbjct: 360 APPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA-PALPPLGNASRTSTP-PV 417
Query: 285 PNPAVETPTNVPTQTMAKP--MPMGVPPFRPLPPKEDTLKVLP 407
P P P+ P+ + P +PMG P PLPP LP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 32.3 bits (70), Expect = 0.087
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 273 PIVVPNPAVETPTNVPTQTMAKPMPMGVPPFRPLPPKEDTLKVLPITSSTRKNYAPLQIP 452
P +P A P P+ +A P+P G+P PLPP P + + ++P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Query: 453 ESKG 464
+ G
Sbjct: 496 QQDG 499
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 31.9 bits (69), Expect = 0.12
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 10/172 (5%)
Frame = +3
Query: 69 PSRRRSVNIKNGAPPNLVADTSRLNAKQEKRAKQNRIMM---RPVAPPLTRPDQAAMDKL 239
P++ + +I A N +N K + PVA P T Q
Sbjct: 137 PAQTTTTSIPTSATDNYTTVNGNVNQSYSKGIDGTALPSTHANPVAAPSTATTQHTQLPK 196
Query: 240 TSLHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPPFRPLPPKEDTLK-VLPITS 416
TS VS +P P+ AV+ PT + P P VP + + L+ + +
Sbjct: 197 TSA---VSHQKPHEAPSTAVKAPTATVAENEPYPKPQSVPTTTSPNNENNALRSTANVIN 253
Query: 417 STRKNYA--PLQIPESKGP--GLAYQSEIY--PQSHNQISKMVSQMTAVQYA 554
+TR++ A P + G GLA S + P S ++ + VQ A
Sbjct: 254 NTRQSTATSPSMFAGNSGNQIGLARVSSSFGRPTSGAKVVPQIHNTVTVQTA 305
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 30.7 bits (66), Expect = 0.27
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 186 RPVA-PPLTRPDQAAMDKLTSLHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPP 362
+P+A P+ P+QAA+ + + P + +P N Q A+P+PM P
Sbjct: 236 QPIAIAPVPAPNQAALPPIPP-QALPANGTPNTLASPVTLPAANSAVQN-AQPVPMTSSP 293
Query: 363 FRPLPPKEDTLKVLPITSSTRKNYAPLQIPES 458
+ P+ T + + N P PES
Sbjct: 294 AMAVVPQNKTAATSTLAAQQGANVLPPNAPES 325
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/62 (25%), Positives = 23/62 (37%)
Frame = +3
Query: 291 PAVETPTNVPTQTMAKPMPMGVPPFRPLPPKEDTLKVLPITSSTRKNYAPLQIPESKGPG 470
P P P Q P+P P P + LP +S +N P +P + P
Sbjct: 237 PIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQP--VPMTSSPA 294
Query: 471 LA 476
+A
Sbjct: 295 MA 296
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 201 PLTRPDQAAMDKLTSLHRRVSTMQPIVVPNPAVETPT------NVPTQTMAKPMPMGVP 359
P T+ + +++K TS + +PIV+P P T T N PT K P+G+P
Sbjct: 131 PYTKVPEVSINKATSKRTDLINDKPIVIPIPRASTSTLYFGKHNKPTSENRKG-PIGIP 188
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 246 LHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPPFRPLP 377
+H +V++ +P TP+ V +Q +P P PP P+P
Sbjct: 714 MHNKVASSNATSLPAAGTATPSPVVSQQ--QPQPYAFPPMYPIP 755
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +3
Query: 108 PPNLVADTSRLNAKQEKRAKQNRIMMRPVAPPLTRPDQAAMDKLTSLHRRVSTMQPIVVP 287
PPN S +++QEK N V P L P A+ + ++ M P V
Sbjct: 401 PPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAM-----AMPPGVTS 455
Query: 288 NPAVETPTNVPTQTMAKPMPMGVP 359
+ AV T +++P Q M P G P
Sbjct: 456 SIAVPTTSSMPLQGM--PTMFGAP 477
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 28.3 bits (60), Expect = 1.4
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Frame = +3
Query: 90 NIKNGAPPNLVADTSRLNAKQEKRAKQNRIMMRPVAPPLTR-PDQAAMDKLTSLHRRVST 266
N + P L + K+ N ++ VA P +AA ++ + S
Sbjct: 327 NRRQSTIPPYARTRQNLLSSPSKQTPVNNVVDASVATQKDGIPGKAASPQVQQQQQTSSA 386
Query: 267 MQ--PIVVPNPAVET--PTNVPTQTMAKPMP 347
Q P V PA +T PT V TQ AKP P
Sbjct: 387 QQQQPQRVEQPAPQTTQPTQVDTQQAAKPAP 417
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +3
Query: 198 PPLTRPDQAAMDKLTSLHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPPFRP-L 374
PP P A D+ + +P + PT P Q A P+P PP P L
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIP-PTYTPKQ--ADPLPAPPPPPPPTL 246
Query: 375 PPKEDTLKVLPITSSTRKN 431
PP+ LP+ S N
Sbjct: 247 PPQSTNTSQLPMPSRNVNN 265
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 258 VSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPPFRPLPP 380
++++ I P P+ P+ Q M M G PPF P+PP
Sbjct: 171 MASLAQIPGPLPSGNVPSPAEFQAM---MASGFPPFMPIPP 208
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +2
Query: 206 HETRPGCDGQTDQPPSQSIHYAANRCS*SGSRNTNQCTNTNYGQTNAHGSPTIQAIATQ 382
HE + + D S S H + + G++ T +N+NY T P + + + Q
Sbjct: 281 HENQTQLNHHLDNNSSISSHNPSLETANDGNQETVSSSNSNYSTTRVDNDPHVASYSPQ 339
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +3
Query: 246 LHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPPFRPLPPKEDTLKVLP-ITSST 422
LH+ I PA+ TP + + PM M PF PLP + P ++S
Sbjct: 268 LHQNKVLRVSIPGSQPALVTPKH---KMNVPPMGMYPLPFSPLPSAAPPIPFSPNVSSHP 324
Query: 423 RKNYAPLQIPESKGP 467
+ P +P P
Sbjct: 325 HMAFLPATVPTHSAP 339
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 4.3
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = +3
Query: 294 AVETPTNVPTQTMAKPMPMGVPPFRPLPPKEDTLKVLPITSSTRKNY--APLQIPESKGP 467
AV +P P T A P P P + PP P+ SS + APL S P
Sbjct: 717 AVNSPAIKPQVTPAPPTPAPTPAVKHHPPPP------PVRSSISPSMPPAPLTHANSSTP 770
Query: 468 -GLAYQSEIYPQSHNQI 515
Q E PQS+ I
Sbjct: 771 MNYVSQPESPPQSYESI 787
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 405 PITSSTRKNYAPL-QIPESKGPGLAYQSEIYPQSHNQISKMVSQMTAVQYAPXSQNQTHP 581
P S++ + +PL + P+ KGP +++QS + N + K Q P N +
Sbjct: 127 PTISNSFVSVSPLLKRPQQKGPEISFQSSVQSTKGNDLMKH-DDTNNHQIPPPKPNFSSK 185
Query: 582 XSY*IHSTGVSTLKSINPFVPMPRTYT 662
VS LK++ ++ T++
Sbjct: 186 AGS-SSPISVSPLKNVKAYISQSPTHS 211
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 285 PNPAVETPTNVPTQT-MAKPMP-MGVPPFRPLPP 380
P PAV PT P + P P MG PP P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 261 STMQPIVVPNPAVETPTN---VPTQTMAKPMPMGV 356
S+ P + P +V T T+ VP+ T+ P P+GV
Sbjct: 158 SSRAPSITPVDSVNTTTSAIQVPSVTLTAPAPLGV 192
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 312 NVPTQTMAKPMPMGVPPFRPLPPKEDTLKVLPITSSTRKNYAPL---QIPESKGPG 470
N PT +KP+ + P PL P+E L P+ PL +PE PG
Sbjct: 83 NEPTSEASKPLLNELVPEEPL-PREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPG 137
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +3
Query: 189 PVAPPLTRPDQAAMDKLTSLHRRVSTMQPIVVPNPAVETPTNVPTQTMAKPMPMGVPPFR 368
PV+ P RP AA ++++ P P P +VP A PMP G P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSA-------------PTPP-PPPMSVPPPPSAPPMPAGPPSAP 1731
Query: 369 PLP 377
P P
Sbjct: 1732 PPP 1734
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 383 RRHAQSTSHHFIDEKELRAPANPRVQRSRISL 478
+ HA+ SH I +K +R P N V R+ + L
Sbjct: 269 KEHAKKCSHDSIGKKGMRVPKNAVVIRTPLVL 300
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/46 (21%), Positives = 27/46 (58%)
Frame = +3
Query: 411 TSSTRKNYAPLQIPESKGPGLAYQSEIYPQSHNQISKMVSQMTAVQ 548
T+++++NY +PE L++++ I+P H+Q + + + ++
Sbjct: 1653 TNASKRNY--FGVPEDCHDSLSWKTFIHPDHHHQFQEKLLNLKTLE 1696
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/62 (25%), Positives = 23/62 (37%)
Frame = +3
Query: 273 PIVVPNPAVETPTNVPTQTMAKPMPMGVPPFRPLPPKEDTLKVLPITSSTRKNYAPLQIP 452
P+ P P P T+ PMP +RP P + T+ T + P P
Sbjct: 75 PLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAY----ETSSEFPPPAYP 130
Query: 453 ES 458
E+
Sbjct: 131 EA 132
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 357 PPFRPLPPKEDTLKVLPITSSTRKNYAPLQIPES 458
PP P PP L + T+KN ++PES
Sbjct: 270 PPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPES 303
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 646 CPAPTQGTADNTITGHTRAICPQXQSCFYFC 738
C + T G D I HT CP S Y C
Sbjct: 1779 CLSCTLGNPDTEIRAHTGKACPVRLSTCYKC 1809
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 646 CPAPTQGTADNTITGHTRAICPQXQSCFYFC 738
C + T G D I HT CP S Y C
Sbjct: 1779 CLSCTLGNPDTEIRAHTGKACPVRLSTCYKC 1809
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 231 DKLTSLHRRVSTMQPIVVPNPAVETPTNVPTQTMAKP 341
D++ + VS Q + P+ E PT P + AKP
Sbjct: 268 DRVVNTTVDVSQSQTVETSGPSKEVPTTQPDASAAKP 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,779,238
Number of Sequences: 5004
Number of extensions: 87167
Number of successful extensions: 292
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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