Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K23
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.074
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   3.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.7  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   6.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.7 bits (71), Expect = 0.074
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +1

Query: 334 SWILTVPSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTSF 513
           SW  T P   TS S+V  S    +++   T  TFT S S+    S+ +T    ++S +S 
Sbjct: 618 SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSS 677

Query: 514 WTENFQLMAVTWS 552
           +  N    + T S
Sbjct: 678 FYSNVTTSSSTVS 690


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -1

Query: 139 RDGESRVYPAVR-VHNGERDFINDAVN 62
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 339  DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 452
            D     V +E KS  K LL    +T LH   +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +3

Query: 408 HTNLHTQNFYAFRFFICEVLNFINVVGQIFFMDFFLDGEFSTYGSDVVSFTEMEPEERVD 587
           HT L   N Y  R    ++LN         FM+ F   +F+ Y    V+ T+ +    V 
Sbjct: 95  HTTLCGSNKYPVRDPFFKMLNRSLAT----FMNAFTASDFTFYPFATVNTTDYKNLRDVY 150

Query: 588 PMARVFPKVTKCTFHKYG 641
             A +FPK+ K  F + G
Sbjct: 151 LDATLFPKLRKLDFLQEG 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,741,555
Number of Sequences: 5004
Number of extensions: 82339
Number of successful extensions: 263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)