Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K19
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   2.5  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   3.3  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   5.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   7.6  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 488 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 363
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 130 VLLAASLGPAAAQRITTIQ-LDGVQYFI-SRMNPY--SPELNYLLSYQYCRSLGLQLASF 297
           VL    LG A     TT+  LD + +   S +N +    E  YL+ ++Y R L + L + 
Sbjct: 357 VLKEVYLGMARQSAYTTVHTLDKINFLKNSAVNLFLLDAESCYLIGFRYIRQLAITLRNT 416

Query: 298 ETKEKADSITTYLTNAGYNKYDFW 369
             +   DS     + +  +  DFW
Sbjct: 417 IHQPSKDSRKPVQSWSYVHSLDFW 440


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 583 IALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYGS 687
           +++  PTF W          ++C  TRC YY+ GS
Sbjct: 147 VSVDQPTFQW---------GWLCVNTRCLYYDTGS 172


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 471 SIDGQSPHVVKSRIKWQTGAHPQ--KHVCAEVITRCPEVI 358
           SIDG   HVV+    W  G H Q  + V A ++   PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 226 YSPELNYLLSYQYCRSLGLQLASFETKEKADSITTYLTNAGYNKY 360
           + PE+N L S+    SLGL LA   T    +   T   N    +Y
Sbjct: 365 FFPEVNVLYSFLEFSSLGLYLAGAGTFHGKEGFATLKRNYSPTQY 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,104
Number of Sequences: 5004
Number of extensions: 63830
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)