Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K13
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 342 EVRRQPPAQHPGFNEHQ 392
           E+RRQ   + P F+ HQ
Sbjct: 24  EIRRQASVEQPSFSVHQ 40


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +2

Query: 665 NNYQQNIRQLSQQTXXXLXQAAPTLPTYQ-NIPTSQNPPXFXSQSAATR 808
           NNY  N ++L +     + Q    +P Y  N P     P    Q    R
Sbjct: 107 NNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPPRPMGPWISMQEQIPR 155


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +2

Query: 665 NNYQQNIRQLSQQTXXXLXQAAPTLPTYQ-NIPTSQNPPXFXSQSAATR 808
           NNY  N ++L +     + Q    +P Y  N P     P    Q    R
Sbjct: 107 NNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPPRPMGPWISMQEQIPR 155


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 653 QXSALGWTKLERIARQLQGALTANI 579
           Q + LG  KLE+  +QLQ  L  N+
Sbjct: 133 QFAELGRKKLEQAIQQLQEQLQLNV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,489
Number of Sequences: 438
Number of extensions: 4469
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)