Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_K11
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 33 0.30
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 1.2
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 2.1
05_01_0143 - 944169-947273 30 2.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 2.8
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 3.7
08_02_0860 + 21970888-21971833,21973400-21974127 29 6.5
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 6.5
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 28 8.6
02_02_0233 + 8105765-8107840 28 8.6
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 33.1 bits (72), Expect = 0.30
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Frame = +2
Query: 365 EHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQ 544
++ T P ++A + +S ++ +I + GI K++ +QIN++Q +
Sbjct: 252 KNTTSAPIDKDNAREEISRLQKEILVMQTEKEFIKSSYESGIAKYWDLEKQINDMQEQVC 311
Query: 545 HFQENFGAQIQKLNETLHFIKPADTIAXPSVEETQNKASFETIESGLKSL-KTXSIAVLX 721
HFQ+ F ++ + A A S E+T K + S +++ ++ + VL
Sbjct: 312 HFQDKFDESAVIEDDEARALMTA--TALKSCEDTIVKLQEQRKTSASQAMGESERVKVLR 369
Query: 722 SYLKVSNCGYVQXDGKXX*XSVRPC 796
LK ++ GK S PC
Sbjct: 370 EKLK----AVMEGHGKSLPDSPDPC 390
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 320 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 409
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Frame = +2
Query: 305 NEEIKRPLVDLRNPGPPQHQEHETQNPEH--HEDAEKIVSSVKNDINTAEIALRQGFQEV 478
+ E+++ N G QE E + H +ED E + S+++ND+ T + +
Sbjct: 473 SSELQQLEASFENLGNDLEQELERISIMHKNNEDLELVNSNLQNDLATVQGQKNEAVAST 532
Query: 479 SDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNE-TLHFIKPADTIAXPSVEETQ-N 652
+ K + +QI+ LQ ++++ + A+ NE T+H + T +E+ Q
Sbjct: 533 LELGNKLEEKNQQISNLQEAVENLE---AAKTNMYNEVTVH--QEKCTFLSSQLEKAQLA 587
Query: 653 KASFETIESGLKSLKTXSI 709
+ +T+ S ++ +K ++
Sbjct: 588 EKEVQTLLSEIEKMKNENL 606
>05_01_0143 - 944169-947273
Length = 1034
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 395 EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENF 562
E+A++ +S ++ +I + G+ K++ +QIN++Q + +FQE F
Sbjct: 130 ENAQEEISRLQKEILVLQTQKEFLKSSYESGMAKYWDLEKQINDMQEEVCYFQEEF 185
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 386 EHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTE-QINELQASLQHFQENF 562
+H + E VSS+K + EI + ++VS +W A E ++EL+A Q+ E
Sbjct: 1679 QHVAELEVQVSSLKQQLQETEIHYKHKEEQVSLREVQWEADQEHSVSELKAQRQYAAE-L 1737
Query: 563 GAQIQKLNETLHFIK 607
QI L + L ++
Sbjct: 1738 EKQIGALTQQLQLVE 1752
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 359 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 523
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>08_02_0860 + 21970888-21971833,21973400-21974127
Length = 557
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 194 LLSMSLIVLAWSMSSCSLDKFSTTFKGLSSAS--GTLSGMEAARAASTNVVSNRAAC 30
LL +S L+WSMS+ S + T G +++S GT R+ +SN+ C
Sbjct: 99 LLDLSSDELSWSMSTTSSSSYQPTNAGAATSSHVGTGDARSDLRSWLGGALSNQDTC 155
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 248 EEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVK 427
+ +KPS D ++VEV D +EEI + G E E + +D++ SS
Sbjct: 334 KSVKPSSSDDDDDVEVEDVDEEIGEENAEEEEEGEEGADEEEN---DSGDDSDSSSSSSD 390
Query: 428 NDINTAE 448
N ++++
Sbjct: 391 NSSDSSD 397
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 248 EEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVK 427
+ +KPS S ++VEV D +EEI + G E E + +D++ SS
Sbjct: 221 KSVKPSSSSSDDDVEVEDVDEEIGEENAE-EEEGEEGADEEEN---DSSDDSDSSNSSSD 276
Query: 428 NDINTAE 448
N I+++E
Sbjct: 277 NSIDSSE 283
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 386 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 517
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,244,448
Number of Sequences: 37544
Number of extensions: 350096
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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