Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K08
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    28   1.4  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     27   3.3  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    27   3.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   4.4  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   4.4  

>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 288 VRETSFYDGIHRPRLGQYPQTCETGPGSPSGHTATA 395
           VRE S Y GIH     ++P  C        G+ ATA
Sbjct: 247 VREWSLYQGIHEETRMEHPDVCTDVLTLADGNIATA 282


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 564 LGALIGSFMAPALCLYVSDPCIWQ 635
           L  LIGSF+ P LC+   D  +W+
Sbjct: 347 LQLLIGSFVFPQLCMSEEDEELWE 370


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 159 ILFPLLSIVDSVFAAQLLLCMAFGGWLNAVMKWWLLEDRPYW 284
           + FP     D+   A    C+ FGG +  V+ WW +  R ++
Sbjct: 467 LCFPQFRGKDNTPDAMNWTCVVFGGPMLMVLIWWFVSARKWF 508


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 435 FMNDRKFRLWWWKYVG 482
           ++ +R FR+WW KY+G
Sbjct: 328 YVFNRLFRIWWLKYLG 343


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 551 REMGSHVHPGQHHGPETHHEQRVADVFPPP 462
           RE  +H  PG+H  P   H +    + PPP
Sbjct: 195 REFPAHHEPGEHMPPPPMHHKPGEHMPPPP 224


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 309 DGIHRPRLGQYPQTCETGPGSPSGH 383
           D IH+P L  YPQT  T   S   H
Sbjct: 294 DFIHKPSLSDYPQTISTFIKSSLSH 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,952
Number of Sequences: 5004
Number of extensions: 75208
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)