Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_K08
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0254 - 14276308-14276313,14277101-14277277,14278290-14278688 31 1.5
05_02_0042 - 5927804-5928085,5928193-5928315 30 2.0
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 30 2.0
06_03_0449 + 20907491-20910146,20910313-20910782 29 3.5
03_03_0077 + 14283416-14283787 29 3.5
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11... 29 4.7
06_01_0136 + 1043888-1044487 29 4.7
06_01_0123 + 951808-952196,958017-958122 29 4.7
11_06_0142 - 20564572-20565951 29 6.2
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 28 8.1
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674... 28 8.1
05_04_0211 + 19088656-19088965,19089911-19089987,19090964-190910... 28 8.1
05_03_0637 - 16465433-16466242 28 8.1
04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431... 28 8.1
03_01_0056 - 471338-471919,472013-472213 28 8.1
01_05_0556 + 23236156-23236364,23236623-23236689,23236903-232371... 28 8.1
>01_03_0254 - 14276308-14276313,14277101-14277277,14278290-14278688
Length = 193
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 499 WVSGP*CWPGCTWLPISRTSVFSGR*SVRSWPRPSVC 609
++ GP WP C W P+S T + + + + + ++C
Sbjct: 129 YLRGPVLWPECGWRPVSLTDLITAASVKKEYRKATLC 165
>05_02_0042 - 5927804-5928085,5928193-5928315
Length = 134
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 629 DAGVRHVQTEGRGHERTDQRPEKTLVREMGSHVHPGQHHGPETHHEQR 486
+ G + + G GH P LV G +H G HHG H+ +
Sbjct: 58 ELGNANAEESGHGHRPVLGVPLGALVELAGGALHDGNHHGGCQRHDDK 105
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 457 RNF-LSFMKCSAHIKKSTSRALAVAVCPEGLPGPVS 353
RNF SF KC+ + + + ALAVA PEGLP ++
Sbjct: 319 RNFKFSFEKCTYYFEIAV--ALAVAAIPEGLPAVIT 352
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 321 RPRLGQYPQTCETGPGSPSGHTATASALLVLFLMWA 428
RP G TC G G GH + L+VLF M A
Sbjct: 618 RPGSGTNLPTCPGGGGGGGGHDELSKGLIVLFSMLA 653
>03_03_0077 + 14283416-14283787
Length = 123
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 607 RQRAGAMNEPISAPRRHW-CGKWVA 536
R+R GAM + APR W CG W A
Sbjct: 24 RRRRGAMETEVEAPRDGWGCGGWRA 48
>08_01_0016 -
109152-109214,109296-109385,109853-109954,110046-110213,
110510-110530,110836-110896,110987-111099,112125-112202,
112294-112434,112532-112696,112776-112868,113096-113162,
113285-113388,113896-114041,114303-114579
Length = 562
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +3
Query: 369 SPSGH--TATASALLVLFLMWAEHFMNDRKFRLWWWKYVGYTLFVVGLGSVMLARMYVAT 542
SPSGH + +SAL VL L+ A + D + ++ + Y L LGS A + A
Sbjct: 5 SPSGHLLASVSSALAVLLLLLACVELGDAAAAVGVYRLIQYDLAGAPLGSRAAALNHHAA 64
Query: 543 HFPHQCLLGALIGSFMAPALCL 608
P + +AP L L
Sbjct: 65 ALPLPAAADLSRSALVAPLLDL 86
>06_01_0136 + 1043888-1044487
Length = 199
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 549 PHQCLLGALIGSFMAPALCLYVS 617
P +CLLGAL+G+ A AL + S
Sbjct: 8 PRRCLLGALVGAIAATALVIAAS 30
>06_01_0123 + 951808-952196,958017-958122
Length = 164
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 549 PHQCLLGALIGSFMAPALCLYVS 617
P +CLLGAL+G+ A AL + S
Sbjct: 8 PRRCLLGALVGAIAATALVIAAS 30
>11_06_0142 - 20564572-20565951
Length = 459
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 252 KWWLLEDRPYWWVRETSFYDGIHRPRLGQYPQTCETGPG 368
+W L D W TSF D +H P G + ++ PG
Sbjct: 222 RWTPLVDGGVWASHGTSFLDAVHNPGDGLFYVLQDSSPG 260
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 209 IALHGLRWLAECCYEMVASRRPTLLVG-EGDFVLRWYPPSKTGT 337
I ++ ++ AE C + V +L+ E +++L WY KTGT
Sbjct: 523 IDVYQFKFFAELCQQKVGESDSVILITHEPNWLLDWYWGDKTGT 566
>06_03_0732 +
23965090-23965431,23965610-23965746,23967359-23967417,
23968817-23970135
Length = 618
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 335 SQSWTVDTIVERSLPHPPIGSVF*KPPFHNSIQPTTEGHAEQ*LSSKHRV 186
+ S T TIV R P P+ + +PP H I + AE S +HRV
Sbjct: 186 TSSTTRMTIVHRHGPCSPLAAAHGEPPSHGEILAADQSRAE---SIQHRV 232
>05_04_0211 +
19088656-19088965,19089911-19089987,19090964-19091047,
19091130-19091243,19091861-19091947,19092000-19092107,
19092643-19092710,19093044-19093131,19093225-19093298,
19093454-19093817,19094024-19094070,19094154-19094235,
19095698-19095817
Length = 540
Score = 28.3 bits (60), Expect = 8.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 459 LWWWKYVGYTLFVVGLGSVM 518
+WWW Y G + F+V +M
Sbjct: 54 VWWWAYAGISCFLVLFAGIM 73
>05_03_0637 - 16465433-16466242
Length = 269
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 536 HVHPGQHHGPETHHEQRVADVFPPP 462
H+HP HH P HH + PPP
Sbjct: 147 HLHPAFHHQPFHHHLLQPQPPPPPP 171
>04_04_0368 +
24741755-24741970,24742415-24742811,24742892-24743187,
24743860-24744096
Length = 381
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 387 ATASALLVLFLMWAEHFMNDRKFRLWWWKYVGYTLFVVGLGSVML 521
A AS ++ FL + R+F W+ Y+G +V +G++ L
Sbjct: 298 AMASLQVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFL 342
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 342 PQTCETGPGSPSGHTATASALLVLFLMWAE 431
P +C+ P SPSG T SA + WA+
Sbjct: 209 PASCQPVPASPSGATGELSAQQKAAMRWAQ 238
>01_05_0556 +
23236156-23236364,23236623-23236689,23236903-23237108,
23237284-23237510,23237865-23237926
Length = 256
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 174 LSIVDSVFAAQLLLCMAFGGWLNAVMKWWLL 266
L +++ L +C+ +GGW A + WW++
Sbjct: 176 LDFAATLYIIHLFICIVYGGW-PASVTWWVV 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,379,406
Number of Sequences: 37544
Number of extensions: 629409
Number of successful extensions: 1813
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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