Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K08
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z83102-2|CAB05464.1|  349|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    29   4.2  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    28   7.3  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -1

Query: 617 RHVQTEGRGHERTDQRPEKTLV----REMGSHVHPGQHHGPETHHEQ 489
           RH Q +G   +R  + P K +        G H + G HHGP  +H Q
Sbjct: 38  RHQQNDGYRGDRRHRSPGKHIAPARAHNRGQHHNRGHHHGPPRNHNQ 84


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -1

Query: 617  RHVQTEGRGHERTDQRPEKTLV----REMGSHVHPGQHHGPETHHEQ 489
            RH Q +G   +R  + P K +        G H + G HHGP  +H Q
Sbjct: 882  RHQQNDGYRGDRRHRSPGKHIAPARAHNRGQHHNRGHHHGPPRNHNQ 928


>Z83102-2|CAB05464.1|  349|Caenorhabditis elegans Hypothetical
           protein C54C8.2 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 472 FHHQRR-NFLSFM-KCSAHIKKSTSRALAVAVCPEGLPGPVSQVCGY 338
           FH Q+  N++S + KC A  K+  +   A  + P     P+ QV GY
Sbjct: 60  FHSQKALNYISMLHKCDAAFKRQMTVHFAFRISPSQSECPMIQVLGY 106


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -1

Query: 623 GVRHVQTEGRGHERTDQRPEKTLVREMGSHVHPGQHHGPETHH 495
           G  H   EG  HE      E  +      H H G+HHG  THH
Sbjct: 379 GAHHEHKEGEHHEHAAHHDEHGV-----HHRHHGEHHG--THH 414


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 569 PEKTLVREMGSHVHPGQHHGPETHHEQRVADVFPPPEAELSVIHEM 432
           P+    R  G H H G  +  E+  E+ + ++ P    EL ++ E+
Sbjct: 705 PKNKKRRSGGDHHHKGDENSDESDEEEEMDEIDPDLRIELYILEEL 750


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -1

Query: 536 HVHPGQHHGPETHHEQRVADVFPPPEAELSVIHEMFCPH----*EEYKQSTSGRCVSRGA 369
           H HPGQ     +     + D   PP A     H+    H     ++Y Q+T     + G 
Sbjct: 20  HHHPGQQQSSSSSSSSHLQDFQSPPSASHPYYHQQQPQHQHQQAQQYGQATGS---TNGG 76

Query: 368 ARTRLTSLW 342
            + ++TS++
Sbjct: 77  GQQQMTSMY 85


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 125 QPCLKSTSYDRDTIPAALHRGLCVCCSTIALHGL 226
           +PC  STS+D + + + + RGL   C T   HG+
Sbjct: 515 RPCQFSTSFDDEIVVSIISRGL-DRCDTCKKHGI 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,516,876
Number of Sequences: 27780
Number of extensions: 462625
Number of successful extensions: 1306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)