Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K08
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.29 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.29 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.50 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    26   0.50 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    26   0.50 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   3.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 309  DGIHRPRLGQYPQTCETGPGSPSGHTATASALLVLFLMW 425
            DG+  P    Y QT E  PGSP+      S+   LF+ W
Sbjct: 1198 DGV--PTTVTYCQTEEDVPGSPADIKVVVSSPQALFISW 1234


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 309  DGIHRPRLGQYPQTCETGPGSPSGHTATASALLVLFLMW 425
            DG+  P    Y QT E  PGSP+      S+   LF+ W
Sbjct: 1194 DGV--PTTVTYCQTEEDVPGSPADIKVVVSSPQALFISW 1230


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 395 SGRCVSRGAARTRLTSLWVLSQSWTV 318
           SG+ +S   A  R+ ++W+ S  WT+
Sbjct: 159 SGKPLSINGALIRIIAIWLFSLGWTI 184


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 395 SGRCVSRGAARTRLTSLWVLSQSWTV 318
           SG+ +S   A  R+ ++W+ S  WT+
Sbjct: 125 SGKPLSINGALIRIIAIWLFSLGWTI 150


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 395 SGRCVSRGAARTRLTSLWVLSQSWTV 318
           SG+ +S   A  R+ ++W+ S  WT+
Sbjct: 35  SGKPLSINGALIRIIAIWLFSLGWTI 60


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 407 KQSTSGRCVSRGAARTRLTSLWVLSQSWTV 318
           KQ  + RCV++ A      +LW  S+ + V
Sbjct: 9   KQLLASRCVTKAAIAGHDGNLWAKSEGFEV 38


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 499 TTNNV*PTYFHHQRRNFLSFMKCSAHIKKSTSRALA 392
           T   + PTYFHH    + S   C  H K+  +  L+
Sbjct: 31  TRTKLQPTYFHHTYIIYESL--CGRHEKRLLNELLS 64


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 499 TTNNV*PTYFHHQRRNFLSFMKCSAHIKKSTSRALA 392
           T   + PTYFHH    + S   C  H K+  +  L+
Sbjct: 31  TRTKLQPTYFHHTYIIYESL--CGRHEKRLLNELLS 64


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 123 VNHVSNPHHTTEILFPLLSIVDSVFAAQLLLCMAFGGWLNAVMKW 257
           + H++  H+T   +  LLS  D     Q+L      G    ++KW
Sbjct: 221 IKHINTRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPTYLIKW 265


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 359 GSGQPLWTHSDR*CSACTLLNVGRTFHE 442
           G+ Q L  H D+ C   T+   G+T H+
Sbjct: 799 GNSQSL-AHQDQCCPGFTMTKSGKTRHQ 825


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,379
Number of Sequences: 438
Number of extensions: 5632
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)