Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K04
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   2.1  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   4.7  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   6.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   8.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   8.3  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 377 ELPAAHPMDLPLIHQGGPFRGQTCQGLRIHQPWSQRD 267
           E  A +P    ++         T Q LR+HQPWS+ D
Sbjct: 6   EWVAIYPQIYDILEHINYVPSNTLQRLRLHQPWSKID 42


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 587 SPPNVSVSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVPNVGXMIV 739
           +P NVS S  ++     L+P+T   + L  T P+S  Q   N+  VG ++V
Sbjct: 137 TPQNVSNSSQILSPFTSLLPSTL--STLKDT-PLSVSQNEKNLETVGEVLV 184


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 458 LQDHL-H*AAAEGPFAQAPILAPGAWGPELPAAHPMDLPLIHQGG 327
           L  H+ H + A   FA   +LA G+ G  L + + MDL +   GG
Sbjct: 419 LDPHVSHASIASSKFAPGILLASGSVGDRLLSENQMDLFVSEDGG 463


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 143 DIKVLFESAGRNIHDGLRLVNRAMADEPPNKRPKMIRDPFQGPSD 277
           D+  L+ES    I D L    RA   +P N   K      +GP++
Sbjct: 657 DLGTLYESCHNQISDALDAYQRAAELDPTNPHIKARLQLLRGPNN 701


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 345  WEVHGVSSREFRAPSPRRKDWGLGKWPLSS 434
            W       RE  AP      WGLG+W L S
Sbjct: 1348 WVTSEQEHREAIAPLAAAAAWGLGQWNLIS 1377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,988
Number of Sequences: 5004
Number of extensions: 66833
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)