Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K02
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   7.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   7.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   7.7  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -3

Query: 560 AANNSTSCNIERATQSSPSDGACSMISAITESS-FKSCIALV-----QPGAFGVHPRVLS 399
           +ANNS   N E+     P+   CS I   T S+ F + + ++     QP  F VH  V+ 
Sbjct: 270 SANNSVFVNYEKKYPVKPNS-QCSGIDFFTPSTAFPTHVQILGVINEQPKLFSVHDEVIP 328

Query: 398 DAFN 387
            +FN
Sbjct: 329 FSFN 332


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 295 LHILEVL-PCLLRFFRGELILMTMMVRWIAFQPQFQEN-LLYSRVQ 164
           L +L +L P   +FF  +  L+ +  RW  FQ Q Q N +++SR++
Sbjct: 408 LTVLTLLQPDSEQFFSSQEELLRLGKRWFRFQMQRQRNDIVWSRIK 453


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 217 NVPSSSLELIHHGKILKDKATLQECG 294
           N+P S  E + H K + D    +ECG
Sbjct: 194 NMPQSDEEAVKHYKFISDHLFEEECG 219


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 29  NLLASLIIYRV-ILKGNLNKKWITSHAYFWV*K*NLDQ 139
           +LLAS+ +Y+  I KG +N K   SH Y +    N+D+
Sbjct: 310 DLLASIGVYQPHIAKGRVNGKRTLSHMYEFTSTINVDE 347


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 496 APSLGEDCVALSILHEVELLAALGANLQTMRR-GATAHPELPIALRHLTNLV 648
           APS+ E+C  L+I    + L  +GA ++  RR GA   P    AL  L  +V
Sbjct: 292 APSI-EECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVV 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,541
Number of Sequences: 5004
Number of extensions: 64885
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)