Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_K01
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 149 5e-37
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 1.1
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 1.4
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 27 3.3
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 27 3.3
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 27 4.4
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 26 7.6
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 7.6
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 149 bits (361), Expect = 5e-37
Identities = 82/211 (38%), Positives = 128/211 (60%), Gaps = 5/211 (2%)
Frame = +2
Query: 20 GGRELHFIEEKEIDLSEILSAPPPKVPLDVSVRAHWLSVDGVQPTVPESPPPLSKEAQKL 199
G L++++++E+D +I++AP PKVP ++S AHWL+++GVQP +P++P P +
Sbjct: 94 GQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAHWLAIEGVQPAIPQNPTPSDHTVGEW 153
Query: 200 ESVDPISKLSKPSNKDSAGKPICGKAAR--LKASESVHVKQLATHELSVEQQLYYKEITE 373
SK ++ G K AR + + ++V +K L H LS E QLY++ IT
Sbjct: 154 --------ASKGTSGVMPGASTAAKEARNGVTSMDNVEIKPLVRHVLSKELQLYFERITS 205
Query: 374 ACVGSDETR---RAEALQSLACDPGLHEMLPRMCTFISEGVKVNVVQNNLALLIYLMRMV 544
A + DET R AL SL DPGLH++LP F+S+ V N+ NL +L LM M
Sbjct: 206 ALL--DETNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSVTRNL--GNLVVLTTLMHMA 261
Query: 545 KALLDNQSLYLEKYLHELIPSVSTCIVSRQL 637
ALLDN +L++E Y+ +L+PS+ TC+V+++L
Sbjct: 262 WALLDNPNLFVEPYVQQLMPSILTCLVAKRL 292
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = +2
Query: 83 PPPKVPLDVSVRAHWLSVDGVQPTVPESPPPLSKEAQKLESVDPISKLSKPSNKDSAGKP 262
PPP+ +++ A L+++ VQPT L+ + ++ KPSN++ G+
Sbjct: 463 PPPESTVEIVSNAPTLAMEDVQPTAASDTMALAPQ-----------EVYKPSNENREGET 511
Query: 263 ICGKAARLKASESVHVKQLA 322
I + ++E H ++ A
Sbjct: 512 ITRSGIAISSTEMDHQQKQA 531
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 152 LVEPHPHLANVHEQIHPMEPLGVVLIGSPKDLSLFL---Q*NGVLYLLQMRTS 3
L+ HP L +V E++ P V I PK+L L L Q GV +L + S
Sbjct: 322 LIRQHPELEHVWEKLEEEAPREVKQIEQPKELVLNLLPFQREGVYWLKRQEDS 374
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 92 KVPLDVSVRAHWLSVDGVQPTVPE--SPPPLSKEAQKLES--VDPISKLSKPSNKDSAGK 259
KV + ++ L++DG+ V S + ++ES V PISK S AG+
Sbjct: 353 KVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGR 412
Query: 260 PICGKAARLKASES 301
GK RL E+
Sbjct: 413 TRPGKCFRLYTEEA 426
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 401 RAEALQSLACDPGLHEMLPRMCTFISEGVKVNVVQNNLALL-IYLMRMVKALLDNQSLYL 577
+ + + LACD ++E + + ++SE V++ V+ + L +++ + D S++L
Sbjct: 340 KLKIITMLACDENINETISELRAYVSE-VELEFVKQTIKCLGDVALKVPSVINDCISIFL 398
Query: 578 EKYLHELIPSVSTCIVSRQLCLR 646
E Y + V V + LR
Sbjct: 399 EIYELNISYMVQEVTVVMETVLR 421
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 164 FQVLLVEPHPHLANVHEQIHPMEPLGVVLIGSPK 63
F +LL +P+PH+ N+ + +GV S K
Sbjct: 149 FPLLLQDPNPHVVNIASSLAYFSAMGVGAYSSSK 182
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 473 ISEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYL 589
I EGV +N + N ++ L+ M + D Q++ + +YL
Sbjct: 286 IVEGVGINRMTRNFSIAEPLIDMAYRVTDEQAVAMSRYL 324
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 20 GGRELHFIEEKEIDLSEILSAPPPKVPLDVSVRAHWLSVDGVQPTVPE-SPPPLSKEAQK 196
GG E +E++ DLS++ P + S+ + + V+P+ E S LS +
Sbjct: 41 GGNESVSVEQEIFDLSQLSERPVSETVSKASIPTNINGLSQVKPSALEKSQEVLSLQKLP 100
Query: 197 LESVDPISKLSKPS 238
++ P + +P+
Sbjct: 101 IKGRRPAGRRGRPA 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,286
Number of Sequences: 5004
Number of extensions: 68542
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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