Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_K01
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.50 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 35  HFIEEKEIDLSEILSAPPPKVPLDVSVRAHWLSVDGVQPTVPESPPPLSKEAQKL-ESVD 211
           HF +  E+ ++  +S P    P  +   ++  S++  QPT+ + PP      ++L E+V 
Sbjct: 695 HFKKALEL-MNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVR 753

Query: 212 PISKL 226
             S++
Sbjct: 754 TASQI 758



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -3

Query: 187 FF*KRWWTFRYCWLNPIHT*PMCTNRYIQW 98
           FF  +W      WLN        TN Y+ W
Sbjct: 649 FFFPKWLQVLALWLNHSPNYDQVTNWYMGW 678


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 100 IGCICSCTLAKCGWGSTNST*KSTTAFKRSSE 195
           +GC+C C LA    G+  S+  S+ +  ++ E
Sbjct: 1   MGCLCECDLATPRTGTNCSSGSSSDSDGQTDE 32


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 14/64 (21%), Positives = 23/64 (35%)
 Frame = +2

Query: 176 LSKEAQKLESVDPISKLSKPSNKDSAGKPICGKAARLKASESVHVKQLATHELSVEQQLY 355
           +  E   +E VDP+  L    +      P CG    L   E    + L   +   ++ LY
Sbjct: 18  VKNEISTVEPVDPVKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQCLLCQKAFDQKNLY 77

Query: 356 YKEI 367
              +
Sbjct: 78  QSHL 81


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 265 YRFTCRIFIAWF 230
           ++ TC+I IAWF
Sbjct: 107 FKSTCKIDIAWF 118


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 327 WVASCLTCTDSDAFNLAAL 271
           ++A  +TC+ S  FNL A+
Sbjct: 262 YIAMDVTCSTSSIFNLVAI 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,715
Number of Sequences: 438
Number of extensions: 5201
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)