Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_J24
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 101 5e-22
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 100 1e-21
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 100 1e-21
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 95 5e-20
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 95 5e-20
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 93 3e-19
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 93 3e-19
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 63 3e-10
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 59 4e-09
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 58 9e-09
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 50 3e-06
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 50 3e-06
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 49 5e-06
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 38 0.010
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 38 0.010
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 2.6
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 2.6
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 2.6
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.6
U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical pr... 29 6.1
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 29 6.1
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 101 bits (243), Expect = 5e-22
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 5/195 (2%)
Frame = +3
Query: 150 GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKL 323
G +SG + T + NG + + + EY+ +LL +K +L + F +L
Sbjct: 37 GPSSGPPQVTITPSGVQSGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERL 96
Query: 324 IDQEVTKVQA---SGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGN 494
D+E+ KV+ +K+S + EHP +NFVG++LGP+G
Sbjct: 97 ADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGM 156
Query: 495 TMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHA 674
T KQL+++T CK+ V GRGSMRD++KEE R P + HL+++LHV I A
Sbjct: 157 TAKQLEQETGCKIMVRGRGSMRDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKV 214
Query: 675 RIAYALAEVKKYLVP 719
++ A+ EV+K LVP
Sbjct: 215 KLMRAVEEVRKLLVP 229
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 100 bits (240), Expect = 1e-21
Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Frame = +3
Query: 213 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 377
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 378 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 557
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 558 RDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
RD++KEE R P + HL+++LHV I A ++ A+ EV+K LVP
Sbjct: 136 RDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 100 bits (240), Expect = 1e-21
Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Frame = +3
Query: 213 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 377
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 378 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 557
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 558 RDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
RD++KEE R P + HL+++LHV I A ++ A+ EV+K LVP
Sbjct: 136 RDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 95.5 bits (227), Expect = 5e-20
Identities = 41/91 (45%), Positives = 62/91 (68%)
Frame = +3
Query: 447 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 626
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 627 LHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
LHV++ +AP A+ R+A + E+ + L P
Sbjct: 200 LHVKVETVAPAYIAYGRVAAVIEELSRILQP 230
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 95.5 bits (227), Expect = 5e-20
Identities = 41/91 (45%), Positives = 62/91 (68%)
Frame = +3
Query: 447 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 626
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 627 LHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
LHV++ +AP A+ R+A + E+ + L P
Sbjct: 200 LHVKVETVAPAYIAYGRVAAVIEELSRILQP 230
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 92.7 bits (220), Expect = 3e-19
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Frame = +3
Query: 240 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 410
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 411 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ 590
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRG 263
Query: 591 SLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
+ + HL DDLHV + H ++ AL +VKK L+P
Sbjct: 264 KAN--WEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIP 304
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 92.7 bits (220), Expect = 3e-19
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Frame = +3
Query: 240 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 410
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 411 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ 590
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRG 263
Query: 591 SLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
+ + HL DDLHV + H ++ AL +VKK L+P
Sbjct: 264 KAN--WEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIP 304
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/85 (38%), Positives = 53/85 (62%)
Frame = +3
Query: 459 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 638
N VG+L+GP+G T++QL++D CK+ + G+G +D KEE LR+ + + HL + +HV
Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVG--WEHLKEPIHVM 186
Query: 639 ISAIAPPAEAHARIAYALAEVKKYL 713
IS + EA + L+ +KK L
Sbjct: 187 ISVRSDSEEAASE---KLSSIKKML 208
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 59.3 bits (137), Expect = 4e-09
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Frame = +3
Query: 444 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSL----DPKYS 611
++PK+NFVG++LGP+G T+KQL+++T C++ V GR S E + +S P S
Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKPNKSTPSFSKPSLS 140
Query: 612 HLA------DDLHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
++ + LHV I + A A++A+A+ +++ L P
Sbjct: 141 IISRNALTEEPLHVYIECQDTQSAAQAKMAHAVEVIQRLLSP 182
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 58.0 bits (134), Expect = 9e-09
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Frame = +3
Query: 447 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSL-DPKYSHLAD 623
+P +NF+G+++GP+G T KQL++DT C++ + RG+ ++ L ++ D +
Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMI--RGNHSNKMYGNALHKTHGDGSQDAIDL 189
Query: 624 DLHVEISAIAPPAEAHARIAYALAEVKKYLVP 719
L V + P EA ARI AL V+ LVP
Sbjct: 190 PLRVIVETSGPRREATARITAALETVQVLLVP 221
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = +3
Query: 285 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 464
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 465 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 563
VG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = +3
Query: 285 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 464
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 465 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 563
VG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 48.8 bits (111), Expect = 5e-06
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = +3
Query: 117 LIKMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL-- 290
L+++A+K+ + + ++ + + + +E K Y+ L EK +L
Sbjct: 14 LLRLAEKHQHSSLLTPPPSDDSQKSLKSTSNHSDQEMSKNLHDVEAYIDALKGEKHQLAQ 73
Query: 291 -NNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFV 467
++ F LID+E+ KV + S+ + P +NFV
Sbjct: 74 YSSGGFNHVFNLIDKEIQKVGGNDAHDGGSQ----MSGDGSMLTETIMVPVEKFPDYNFV 129
Query: 468 GKLLGPKGNTMKQLQEDTLCKMAVLGR 548
G+LLGP+G T KQL+ T C++ +LGR
Sbjct: 130 GRLLGPRGTTAKQLEVTTGCRITILGR 156
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/65 (29%), Positives = 38/65 (58%)
Frame = +3
Query: 453 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLH 632
K N++G++LGP G + + ++ + + G GS+R++ +E +R+ + HL + LH
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVRK----RNEHLEEPLH 206
Query: 633 VEISA 647
V + A
Sbjct: 207 VLLIA 211
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 459 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 638
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 159
Query: 639 I 641
I
Sbjct: 160 I 160
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 459 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 638
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 222
Query: 639 I 641
I
Sbjct: 223 I 223
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 459 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 638
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 200
Query: 639 I 641
I
Sbjct: 201 I 201
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 465 VGKLLGPKGNTMKQLQEDT 521
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 465 VGKLLGPKGNTMKQLQEDT 521
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 465 VGKLLGPKGNTMKQLQEDT 521
VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 559 LIEPLPSTAILHSVSSCNCFIVFPF 485
L+EP+ I H V CNC++ PF
Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 180 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 356
TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S
Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62
>U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical
protein R08E3.3a protein.
Length = 455
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +3
Query: 462 FVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ-SLDPKYSHLADDLHVE 638
+V KL+G KQ++EDT + + Q EEL+ D + ++ +
Sbjct: 280 YVQKLMGKIAELNKQMEEDTQIIENTKQANAQKKLQMREELKNLGTDDEEIRRIQEMEAD 339
Query: 639 ISAIAPPAEAHARIAYALAEVKKYLVPDXMKLY 737
+ + E++ +A L + + D +Y
Sbjct: 340 LEGVDERIESNVMLAEKLRKKLSKIDDDVQSMY 372
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +3
Query: 462 FVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ-SLDPKYSHLADDLHVE 638
+V KL+G KQ++EDT + + Q EEL+ D + ++ +
Sbjct: 280 YVQKLMGKIAELNKQMEEDTQIIENTKQANAQKKLQMREELKNLGTDDEEIRRIQEMEAD 339
Query: 639 ISAIAPPAEAHARIAYALAEVKKYLVPDXMKLY 737
+ + E++ +A L + + D +Y
Sbjct: 340 LEGVDERIESNVMLAEKLRKKLSKIDDDVQSMY 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,135,116
Number of Sequences: 27780
Number of extensions: 306341
Number of successful extensions: 836
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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