Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_J24
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    28   0.10 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 132 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL 290
           +KY+KNG      K++  +  P ++    E     N++ GE M   ++E  +L
Sbjct: 164 EKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSEL 216


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 117 LIKMADKYDKNGYNSGDF 170
           LIK++D  ++  YN+GD+
Sbjct: 229 LIKISDVLEETFYNNGDY 246


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 707 FFDFCKCICNSSVSLCWWCYGRYLNMK 627
           +FD C  + N++V++  +  G YL +K
Sbjct: 464 YFDKCDTLINNAVAVENFKGGMYLRLK 490


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 707 FFDFCKCICNSSVSLCWWCYGRYLNMK 627
           +FD C  + N++V++  +  G YL +K
Sbjct: 464 YFDKCDTLINNAVAVENFKGGMYLRLK 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,581
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)