Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_J21
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 233 2e-62
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 174 1e-44
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 137 2e-33
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 129 6e-31
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 128 7e-31
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 127 2e-30
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 126 5e-30
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 125 9e-30
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 124 2e-29
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 123 3e-29
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 120 3e-28
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 117 2e-27
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 115 7e-27
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 113 3e-26
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 110 2e-25
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 109 6e-25
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 107 2e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 107 3e-24
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 99 4e-22
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 93 3e-20
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 93 3e-20
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 88 1e-18
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 76 7e-15
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 34 0.022
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 32 0.089
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 32 0.12
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.16
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 1.1
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.9
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 26 5.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 7.8
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 233 bits (571), Expect = 2e-62
Identities = 120/193 (62%), Positives = 148/193 (76%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
FQSMGL+ +L+ I K+G+K PTPIQRKTIP+ L G+DVV MARTGSGKTA FV+P++E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 373 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 552
L N RALILSP RELALQT++ V++ K T L S AI+GG S+E+QF+++
Sbjct: 131 L----KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLL 186
Query: 553 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSSR 732
SG PDIVVATPGRFLH+ +EM L+L +I+ VVFDEADRLFE+GF QL EI L +SR
Sbjct: 187 SGK-PDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSR 245
Query: 733 QTLLFSATLPKML 771
QTLLFSATLP+ L
Sbjct: 246 QTLLFSATLPRTL 258
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 174 bits (424), Expect = 1e-44
Identities = 98/208 (47%), Positives = 131/208 (62%), Gaps = 2/208 (0%)
Frame = +1
Query: 190 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 369
+FQSM LS P+LKG++ G++ PT IQ KTIP+AL GKD+V A TGSGKTA F++PILE
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 370 KLLV-PNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 546
+LL P PT R LIL PTRELA+Q ++ FT + +GG S++ Q
Sbjct: 320 RLLYRPKKVPT----TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQ 375
Query: 547 VMSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLL 723
+ PDIV+ATPGRF+ H+ ++NI+I+V DEADR+ E GF ++L EI
Sbjct: 376 ELR-KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACP 434
Query: 724 SSRQTLLFSATLPKMLXXLRGLDYXIPL 807
SRQT+LFSAT+ + L L P+
Sbjct: 435 KSRQTMLFSATMTDKVDDLIRLSLNRPV 462
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 137 bits (331), Expect = 2e-33
Identities = 75/198 (37%), Positives = 117/198 (59%), Gaps = 1/198 (0%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F+ +G+ + + K G+K PTPIQ++ IP+ L +DV+ +A+TGSGKTA F LP++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 373 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 552
L N P+P A++L+PTRELA Q +G G+ S I+GG + Q +
Sbjct: 108 LW---NNPSP---FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 553 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSS 729
S P ++V TPGR + H+ L N+K ++ DEADRL ++ FG + +I +
Sbjct: 162 S-KKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE 220
Query: 730 RQTLLFSATLPKMLXXLR 783
R+TLLFSAT+ + L+
Sbjct: 221 RRTLLFSATMTSKVEKLQ 238
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 129 bits (311), Expect = 6e-31
Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 2/190 (1%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F + LS + K I + G++ T IQ+++IP L G+DV+ A+TGSGKT F++P +E
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 373 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 552
L KP G + +I+SPTRELALQ +EL K+ T ++GG + + + +
Sbjct: 151 LYALKFKPRNGTGV--IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKL 208
Query: 553 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLS- 726
+++VATPGR L H+ N++ +V DEADR+ E+GF +++++I L S
Sbjct: 209 V-KGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSE 267
Query: 727 SRQTLLFSAT 756
+RQTLLFSAT
Sbjct: 268 NRQTLLFSAT 277
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 128 bits (310), Expect = 7e-31
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 4/201 (1%)
Frame = +1
Query: 190 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 369
++ GLS + I GY++PT IQ + IP +G+DV+ +A+TGSGKT F+LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 370 KLLVPNNKP-TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 546
+ + +P G+ A+I++PTRELA+Q R + K + + GG I+ Q
Sbjct: 479 H--IKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 547 VMSGSSPDIVVATPGRFLHICIEMCLKLDNI---KIVVFDEADRLFELGFGEQLQEICAR 717
+ + +IVV TPGR + + ++ N+ +V DEADR+F+LGF Q+ I
Sbjct: 537 DLKRGA-EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINN 595
Query: 718 LLSSRQTLLFSATLPKMLXXL 780
+ RQT+LFSAT P+ + L
Sbjct: 596 IRPDRQTVLFSATFPRAMEAL 616
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 127 bits (306), Expect = 2e-30
Identities = 73/205 (35%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F + L+ P + + T IQ++ IP AL G+D++ A+TGSGKT F++P++E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 373 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 552
L K T L AL++SPTRELA+QT + ++G+ ++ I+GG + +++ +
Sbjct: 101 LY--RKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL 158
Query: 553 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSS 729
S +I+V TPGR L HI + +++++ DEADR+ ++GF L I + L
Sbjct: 159 --SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVH 216
Query: 730 RQTLLFSATLPKMLXXLRGLDYXIP 804
RQT+LFSAT K + L L P
Sbjct: 217 RQTMLFSATQTKSVKDLARLSLQNP 241
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 126 bits (303), Expect = 5e-30
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 2/198 (1%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F+ G VLK + + G++ PTPIQ++ P+A++G+D+V ++ TGSGKT + LP +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 373 LLVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 546
+ N +P +PG L+L+PTRELA+Q + + GK + + + + GG Q
Sbjct: 184 I---NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 547 VMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLS 726
+ +I +ATPGR L + L + +V DEADR+ ++GF Q+++I ++
Sbjct: 241 DLI-RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299
Query: 727 SRQTLLFSATLPKMLXXL 780
RQT++FSAT PK + L
Sbjct: 300 DRQTVMFSATWPKEVQRL 317
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 125 bits (301), Expect = 9e-30
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 1/204 (0%)
Frame = +1
Query: 181 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 360
S F L + + I K +++PT +Q +TIP+AL GKD+VA ARTGSGKTA +++P
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIP 71
Query: 361 ILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAI-LGGESIEQ 537
ILE LL + + AL+L PTRELA Q + +L F I + S +
Sbjct: 72 ILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDT 131
Query: 538 QFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR 717
+ PDIV+ATP R + L LD +K +V DEAD + G+ E ++ +
Sbjct: 132 VQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRS 191
Query: 718 LLSSRQTLLFSATLPKMLXXLRGL 789
L Q+ L SATL K + L+ L
Sbjct: 192 LPRGTQSFLMSATLSKNIASLQKL 215
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 124 bits (298), Expect = 2e-29
Identities = 72/214 (33%), Positives = 114/214 (53%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F+ L +L GI + G+++P+PIQ ++IPIAL+G+D++A A+ G+GKTA FV+P LEK
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 373 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 552
+ T ++ LIL PTRELALQT + + LGK + GG ++ +
Sbjct: 106 V------DTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDI-IR 158
Query: 553 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSSR 732
+ IVV TPGR L + + V DEAD+L F ++++ + +R
Sbjct: 159 LNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNR 218
Query: 733 QTLLFSATLPKMLXXLRGLDYXIPLDRXMLXXIT 834
Q L+SAT P ++ P + ++ +T
Sbjct: 219 QISLYSATFPLIVKNFMDKHLNKPYEINLMDELT 252
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 123 bits (297), Expect = 3e-29
Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 6/202 (2%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F + +S + +G+ + YK+PTPIQ T P L G+DVV +A TGSGKT F +P L+
Sbjct: 169 FDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 373 LL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 549
L + +NK P R L++SPTRELA+QT + L + T L + + GG +Q
Sbjct: 227 LNGLSDNKSVP----RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARA 282
Query: 550 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL--- 720
+S +++ TPGR L + + + + +V DEADR+ + GF + ++ I +
Sbjct: 283 AKNAS--VIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDP 340
Query: 721 --LSSRQTLLFSATLPKMLXXL 780
SRQT+ FSAT P+ + L
Sbjct: 341 TRNGSRQTVFFSATWPESVRAL 362
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 120 bits (288), Expect = 3e-28
Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 16/212 (7%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F S L+ +L+ I GY QPTP+Q+ +IPI +G+D++A A+TGSGKTA F+ PIL
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 373 LLVPNNKPTP-----GKNLR-------ALILSPTRELALQTLRFVRELGKFTGLTSAAIL 516
P G R LIL+PTREL Q R+ + + A+
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVY 290
Query: 517 GGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQ 696
GG I Q + D++ ATPGR + + + L NIK +V DEADR+ ++GF Q
Sbjct: 291 GGADIRAQIRQID-QGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ 349
Query: 697 LQEIC--ARLLS--SRQTLLFSATLPKMLXXL 780
++ I A + S RQTL+FSAT P+ + L
Sbjct: 350 IRHIVEGADMTSVEERQTLMFSATFPRDIQLL 381
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 117 bits (281), Expect = 2e-27
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 22/218 (10%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
++ GL +LK + K YK+P+ IQR IP+ L KD++ +A TGSGKTA F++P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 373 L--LVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 546
+ L P + A++L+PTRELA Q + + G +++GG + E+Q
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSF 370
Query: 547 VMSGSSPDIVVATPGRFLHICIEMCL-KLDNIKIVVFDEADRLFELGFGEQLQEICARLL 723
MS IVVATPGR L C+E L L VV DEADR+ ++GF + + +I + L
Sbjct: 371 QMS-QGAHIVVATPGRLLD-CLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
Query: 724 SS-------------------RQTLLFSATLPKMLXXL 780
SS RQT++FSATLP + L
Sbjct: 429 SSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANL 466
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 115 bits (277), Expect = 7e-27
Identities = 68/192 (35%), Positives = 104/192 (54%)
Frame = +1
Query: 190 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 369
+F+ M L +L+GI GY+ P+ +Q + I G+DV+A A++G+GKTA F + IL+
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 370 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 549
+ ++ +ALILSPTRELA+Q V LG + A +GG S+
Sbjct: 82 SI------DLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKK 135
Query: 550 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSS 729
+ +V TPGR + L+ N+K+++ DEAD L GF EQ+ +I L
Sbjct: 136 LD-YGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPG 194
Query: 730 RQTLLFSATLPK 765
Q ++ SATLP+
Sbjct: 195 TQVVVVSATLPQ 206
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 113 bits (272), Expect = 3e-26
Identities = 67/191 (35%), Positives = 105/191 (54%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 372
F M L +L+GI G+++P+ IQ++ I L +DV+A A++G+GKTA F + +L+K
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 373 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 552
+ T K +ALIL+PTRELA Q + V LG + A +GG + +
Sbjct: 81 I------DTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAAL 134
Query: 553 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSSR 732
+ +VV TPGR + L D +++ V DEAD + GF +Q+ +I L +
Sbjct: 135 Q-AGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTA 193
Query: 733 QTLLFSATLPK 765
Q +L SAT+P+
Sbjct: 194 QVVLLSATMPQ 204
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 110 bits (265), Expect = 2e-25
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 9/199 (4%)
Frame = +1
Query: 190 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 369
+FQS+ + + + +G+K+ TP+Q IP+ L KD+V A TGSGKT ++LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 370 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF--------TGLTSAAILGGE 525
K+ + T L ALI++PTRELA Q +EL + L + +GG+
Sbjct: 62 KV---TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGK 118
Query: 526 -SIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQ 702
++ +P +V+ TPGR + + K +++I++ DEAD L ++GF LQ
Sbjct: 119 GTLTNDLASFREKNPSVVIGTPGRLNEMLSHISSK--HLEILILDEADTLIDMGFQRTLQ 176
Query: 703 EICARLLSSRQTLLFSATL 759
I ++L R+T LFSAT+
Sbjct: 177 SIISQLPKQRRTGLFSATM 195
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 109 bits (261), Expect = 6e-25
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 6/200 (3%)
Frame = +1
Query: 190 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 369
A+ LS +L ++K G+ +P PIQ IP A G D++ A TGSGKT F +PILE
Sbjct: 123 AWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE 182
Query: 370 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 549
L + K ++AL+++PTRELA Q + + + +I GG ++++Q +
Sbjct: 183 HCL----RNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRL 238
Query: 550 MSGSSPDIVVATPGRFLHICIEMCL--KLDNIKIVVFDEADRLFELGFGEQLQEICARL- 720
++ P +VVATPGR + E L IK +V DEADRL + E+L ++ L
Sbjct: 239 LN-KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILG 297
Query: 721 ---LSSRQTLLFSATLPKML 771
+ RQT +FSAT + L
Sbjct: 298 NPMHTQRQTFIFSATFDEGL 317
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 107 bits (257), Expect = 2e-24
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 4/196 (2%)
Frame = +1
Query: 184 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 363
S F+ L +L+ IT G++ P+ +Q+ IP ++ G DV+ A++G GKTA FVL
Sbjct: 50 STGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLST 109
Query: 364 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESIEQQ 540
L+++ +P G+ + L+L TRELA Q K+ + +A GG +I+Q
Sbjct: 110 LQQI-----EPVDGE-VSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQD 163
Query: 541 FNVM--SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEIC 711
SP IVVATPGR + E LK++++K V DE D+L E + +QE+
Sbjct: 164 MEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVF 223
Query: 712 ARLLSSRQTLLFSATL 759
+Q ++FSATL
Sbjct: 224 RATPPQKQVMMFSATL 239
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 107 bits (256), Expect = 3e-24
Identities = 77/204 (37%), Positives = 109/204 (53%), Gaps = 6/204 (2%)
Frame = +1
Query: 190 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 369
+F +G+S ++ + +PT IQ I L G++ + A+TGSGKTA F LPI+E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 370 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 549
K +K G + ALIL+PTRELA+Q LG L A I+GG + +Q ++
Sbjct: 68 KW----SKDPSG--IFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQ-SI 120
Query: 550 MSGSSPDIVVATPGRFLHIC----IEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR 717
P +VVATPGR + E L IK +V DEADRL F + L + +
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV 180
Query: 718 LLSS--RQTLLFSATLPKMLXXLR 783
L +S RQTLLF+AT+ + L+
Sbjct: 181 LPASEDRQTLLFTATVTDAIRQLK 204
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 99 bits (238), Expect = 4e-22
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 4/198 (2%)
Frame = +1
Query: 208 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKD-VVAMARTGSGKTACFVLPILEKLLVP 384
LS +++ G+++ TP+Q++ + ++ V A+TG+GKT F+L + +L
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKG 104
Query: 385 NNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSS 564
+ K + ++ILSPTRELALQ R+L TG+ + +GG S ++ N + +
Sbjct: 105 KPRLNSSK-IHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGN 163
Query: 565 PDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSSR-QT 738
++++ATPGR H+ L+ + + DEADRL ++GF E + I + +++ +
Sbjct: 164 ANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRK 223
Query: 739 LLFSATL-PKMLXXLRGL 789
L FSAT+ PK+ RG+
Sbjct: 224 LCFSATMPPKVSNVFRGI 241
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 93.5 bits (222), Expect = 3e-20
Identities = 66/186 (35%), Positives = 94/186 (50%), Gaps = 1/186 (0%)
Frame = +1
Query: 226 KGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPG 405
+ + K+ + T IQR IP + +D++A A TGSGKT ++ PIL+KL + PG
Sbjct: 59 ENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQL----HVPG 114
Query: 406 KNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVAT 585
RA+I++PTREL Q R +L T L + Q+ D+ + T
Sbjct: 115 -GYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGT 173
Query: 586 PGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSSR-QTLLFSATLP 762
P R + I+ L + ++ V DEADRLFE GF EQ I + SS LFSAT+P
Sbjct: 174 PMRLVQ-AIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIP 232
Query: 763 KMLXXL 780
+ L
Sbjct: 233 SRVEEL 238
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 93.5 bits (222), Expect = 3e-20
Identities = 62/192 (32%), Positives = 108/192 (56%), Gaps = 3/192 (1%)
Frame = +1
Query: 190 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTG--KDVVAMARTGSGKTACFVLPI 363
+F+ + L +LKGI +++P+ IQ K +P+ L+ ++++ +++G+GKTA F L +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 364 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF 543
L + V + P P +A+ L+P+RELA Q + V E+GK+T + +A + +S+ +
Sbjct: 175 LSR--VDASVPKP----QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI-KDSVPKGA 227
Query: 544 NVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLF-ELGFGEQLQEICARL 720
+ IV+ TPG + + L +IK+ V DEAD + + G G+Q I L
Sbjct: 228 KI----DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 283
Query: 721 LSSRQTLLFSAT 756
+ Q +LFSAT
Sbjct: 284 PRNTQIVLFSAT 295
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 88.2 bits (209), Expect = 1e-18
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 7/182 (3%)
Frame = +1
Query: 238 KRGYKQPTPIQRKTIPIALT--GKDVVAMARTGSGKTACFVLPILEKLL-VPNNKPTPGK 408
K PT IQ +P L KD A+TGSGKT ++LPI+++L+ +P N T
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTS 215
Query: 409 NLRALILSPTRELALQTLRFVRELGKFT---GLTSAAILGGESIEQQFNVMSGSSPDIVV 579
+ A+I++PTREL Q +L + S ++GGE + + +I++
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSE-KARIRKGVNILI 274
Query: 580 ATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSSRQTLLFSAT 756
TPGR H+ L + ++ VV DE DRL ++GF E L +I + L S + +
Sbjct: 275 GTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLS 334
Query: 757 LP 762
+P
Sbjct: 335 IP 336
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 75.8 bits (178), Expect = 7e-15
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Frame = +1
Query: 193 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALT----------GKDVVAMARTGSGKT 342
F S+ +S +++ + K+ + +Q +P+ L G DV A TGSGKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 343 ACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 522
+V+PI++ L +++ P LR +++ PTREL +Q + GL A G
Sbjct: 188 LSYVIPIVQCL---SHRTVP--RLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQ 242
Query: 523 ESIEQQFNVMSGSSP----DIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGF 687
+S+ + ++G D++V+TPGR + HI + L +++ +V DEADRL + F
Sbjct: 243 KSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSF 302
Query: 688 GEQLQEI 708
+ + +
Sbjct: 303 QDWVDTV 309
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 34.3 bits (75), Expect = 0.022
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Frame = +1
Query: 265 IQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKLL--VPNNKPTPGKNLRALILSP 435
IQ PIA T ++++ A TG+GKT +L IL +L + + +N + + ++P
Sbjct: 523 IQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAP 582
Query: 436 TRELALQTL-RFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICI 612
+ L + + F + L + A L G+S Q S I+V TP ++ I
Sbjct: 583 LKALVQEMVNNFSKRLTPYN--IRVAELTGDS---QLTKQQISETQIIVTTPEKWDIITR 637
Query: 613 EM--CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLLSSRQTLL-------FSATLP 762
+ ++ +++V+ DE L + G L+ I AR+ ++ L SATLP
Sbjct: 638 KANDLSYVNLVRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLP 695
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 32.3 bits (70), Expect = 0.089
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Frame = +1
Query: 298 GKDVVAMA-RTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVR 474
GK +A++ TGSGKTA F P K P +P + + LIL +ELALQ L+ R
Sbjct: 45 GKRRIAVSLATGSGKTALF--PHFIKY-APTLRPN---SEQCLILVHRKELALQALKHCR 98
Query: 475 ELGKFTGLTSAAILGGESIE-QQFNVMSGSSPDIVVATPGRFLHICIEMCLKLD--NIKI 645
E L +SIE N + D+ VA+ + E LK + N K+
Sbjct: 99 E-----------SLPNKSIEIDMGNQCASGLADVTVAS---VFSLKNERLLKYNPLNFKL 144
Query: 646 VVFDEADRLFELGFGEQLQEICARLLSSRQTLL-FSATL 759
++FDE + + L+ A S+ ++ +ATL
Sbjct: 145 LIFDEVHHMASPSYLRILEHFGAESEKSKVNVIGLTATL 183
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 31.9 bits (69), Expect = 0.12
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Frame = +1
Query: 211 SFPVLKGITKRGYKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKL---- 375
S +L T Y+ IQ PIA T ++++ A TG+GKT +L +L+ +
Sbjct: 263 SMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYV 322
Query: 376 ----LVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQ 537
L+ ++P + + + ++P + LA + + + + + GL + + G +
Sbjct: 323 ESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTG----DM 378
Query: 538 QFNVMSGSSPDIVVATPGRF---LHICIEMCLKLDNIKIVVFDEADRLF-ELG-FGEQLQ 702
Q + I+V TP ++ + + +++V+ DE L E G E L
Sbjct: 379 QLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLV 438
Query: 703 EICARLLSSRQTLL----FSATLPKML 771
RL+ + Q ++ SATLP L
Sbjct: 439 ARTQRLVETSQQMIRIVGLSATLPNYL 465
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 268 QRKTIPIALTGKDVVAMARTGSGKTACFVLP 360
Q + I L+GKDV + TG GK+ C+ LP
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLP 554
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +1
Query: 235 TKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNL 414
T R ++ Q I G V+ T SGK+ + +PIL+ LL N
Sbjct: 305 TSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS------- 357
Query: 415 RALILSPTRELA 450
A + PT+ LA
Sbjct: 358 TAFFVFPTKSLA 369
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 445 LALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 546
+A TL F+R +G G+T ++ E + Q F+
Sbjct: 485 MATATLMFIRTMGGSIGITVGEVIFNERVTQSFD 518
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 557 PDITLNCCSMDSPPRIAALVNPVNFPSSLT 468
PD+ +CCS P + AL V+F S+ T
Sbjct: 1942 PDLFFSCCSHFIVPMVNALPKLVSFSSAST 1971
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +1
Query: 535 QQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICA 714
+ FN + G D+V+ R H + L L++ + + D+ D +L L C
Sbjct: 596 ESFNAVPGEGVDVVLRWKERTFHALLGNSLLLEHNNVSIPDDFDSKLKLSSSSGL--TCV 653
Query: 715 RLLSSRQTLLF 747
R+ Q + F
Sbjct: 654 RIAIDGQFVGF 664
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 578 TTMSGEEPDITLNCCSMDSPPRIAALVNPVNFPSSLTNLNVCNASS 441
T SG+ +T + S D + LVN ++P+ NL +S+
Sbjct: 31 TWQSGQVNTVTWSSVSTDPEEMVIMLVNNAHYPNQNFNLGTVQSSA 76
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 7.8
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Frame = +1
Query: 301 KDVVAMARTGSGKTACFVLPILEKL---LVPNNKPTPGKNLRALILSPTRELALQTLRFV 471
++ + + RTG+GKT V I +KL ++ K + +++ L Q ++
Sbjct: 26 QNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVNKV-PLVFQQAEYI 84
Query: 472 R-ELGKFTGLTSAAILGGESIEQQFNVMSG--SSPDIVVATPGRFLHICIEMCLKLDNIK 642
R +L G+ G SIE +++ +++V T F L ++++
Sbjct: 85 RSQLPAKVGM----FYGELSIEMSEQLLTNIILKYNVIVITADLFYLFLARGFLSINDLN 140
Query: 643 IVVFDE 660
+++FDE
Sbjct: 141 LIIFDE 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,889
Number of Sequences: 5004
Number of extensions: 54789
Number of successful extensions: 216
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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