Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_J20
(871 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC006417-1|AAH06417.2| 580|Homo sapiens XRN2 protein protein. 31 4.1
AY382900-1|AAR24369.1| 907|Homo sapiens 5'-3' exoribonuclease 2... 31 4.1
AL158013-2|CAH71495.1| 950|Homo sapiens 5'-3' exoribonuclease 2... 31 4.1
AL117332-2|CAI19756.1| 950|Homo sapiens 5'-3' exoribonuclease 2... 31 4.1
AK000084-1|BAA90934.1| 560|Homo sapiens protein ( Homo sapiens ... 31 4.1
AF152169-1|AAQ13577.1| 950|Homo sapiens DHP protein protein. 31 4.1
AF064257-1|AAD55138.1| 950|Homo sapiens Dhm1-like protein protein. 31 4.1
Y15287-1|CAC79687.1| 404|Homo sapiens G-protein coupled recepto... 31 7.2
Y13583-1|CAA73910.1| 404|Homo sapiens G-protein coupled recepto... 31 7.2
BC034761-1|AAH34761.1| 404|Homo sapiens adrenomedullin receptor... 31 7.2
AY268434-1|AAP23201.1| 404|Homo sapiens adrenomedullin receptor... 31 7.2
>BC006417-1|AAH06417.2| 580|Homo sapiens XRN2 protein protein.
Length = 580
Score = 31.5 bits (68), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 216 GVKRKLEDGECDPEPNDN 269
G+KRK ED + +PEP DN
Sbjct: 121 GIKRKAEDSDSEPEPEDN 138
>AY382900-1|AAR24369.1| 907|Homo sapiens 5'-3' exoribonuclease 2
isoform 3 protein.
Length = 907
Score = 31.5 bits (68), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 216 GVKRKLEDGECDPEPNDN 269
G+KRK ED + +PEP DN
Sbjct: 448 GIKRKAEDSDSEPEPEDN 465
>AL158013-2|CAH71495.1| 950|Homo sapiens 5'-3' exoribonuclease 2
protein.
Length = 950
Score = 31.5 bits (68), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 216 GVKRKLEDGECDPEPNDN 269
G+KRK ED + +PEP DN
Sbjct: 491 GIKRKAEDSDSEPEPEDN 508
>AL117332-2|CAI19756.1| 950|Homo sapiens 5'-3' exoribonuclease 2
protein.
Length = 950
Score = 31.5 bits (68), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 216 GVKRKLEDGECDPEPNDN 269
G+KRK ED + +PEP DN
Sbjct: 491 GIKRKAEDSDSEPEPEDN 508
>AK000084-1|BAA90934.1| 560|Homo sapiens protein ( Homo sapiens
cDNA FLJ20077 fis, clone COL02904. ).
Length = 560
Score = 31.5 bits (68), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 216 GVKRKLEDGECDPEPNDN 269
G+KRK ED + +PEP DN
Sbjct: 101 GIKRKAEDSDSEPEPEDN 118
>AF152169-1|AAQ13577.1| 950|Homo sapiens DHP protein protein.
Length = 950
Score = 31.5 bits (68), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 216 GVKRKLEDGECDPEPNDN 269
G+KRK ED + +PEP DN
Sbjct: 491 GIKRKAEDSDSEPEPEDN 508
>AF064257-1|AAD55138.1| 950|Homo sapiens Dhm1-like protein protein.
Length = 950
Score = 31.5 bits (68), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 216 GVKRKLEDGECDPEPNDN 269
G+KRK ED + +PEP DN
Sbjct: 491 GIKRKAEDSDSEPEPEDN 508
>Y15287-1|CAC79687.1| 404|Homo sapiens G-protein coupled receptor
protein.
Length = 404
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 641 PYH*PWLLCYHNSHRMDLPCH*IH-TYFFYRVVSDC 537
PYH LL + + L CH +H YFFY V+ DC
Sbjct: 273 PYHVTLLLLTLHGTHISLHCHLVHLLYFFYDVI-DC 307
>Y13583-1|CAA73910.1| 404|Homo sapiens G-protein coupled receptor
protein.
Length = 404
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 641 PYH*PWLLCYHNSHRMDLPCH*IH-TYFFYRVVSDC 537
PYH LL + + L CH +H YFFY V+ DC
Sbjct: 273 PYHVTLLLLTLHGTHISLHCHLVHLLYFFYDVI-DC 307
>BC034761-1|AAH34761.1| 404|Homo sapiens adrenomedullin receptor
protein.
Length = 404
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 641 PYH*PWLLCYHNSHRMDLPCH*IH-TYFFYRVVSDC 537
PYH LL + + L CH +H YFFY V+ DC
Sbjct: 273 PYHVTLLLLTLHGTHISLHCHLVHLLYFFYDVI-DC 307
>AY268434-1|AAP23201.1| 404|Homo sapiens adrenomedullin receptor
protein.
Length = 404
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 641 PYH*PWLLCYHNSHRMDLPCH*IH-TYFFYRVVSDC 537
PYH LL + + L CH +H YFFY V+ DC
Sbjct: 273 PYHVTLLLLTLHGTHISLHCHLVHLLYFFYDVI-DC 307
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,152,506
Number of Sequences: 237096
Number of extensions: 1100436
Number of successful extensions: 2896
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2876
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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