Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_J18
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   1.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   2.1  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   6.4  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.4  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    26   8.5  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 97  KNFLFNSQNLCYSLRASALGRCVDWLAS 14
           K+FLF   ++  SL  S+LGRC   LAS
Sbjct: 216 KSFLFKKSSIDNSLLHSSLGRCFSALAS 243


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 163 VRGVRKLRAEWTFWLEWEHSTDKNFLFNSQNLCY 62
           + G  K    +T WL   + +DK FL N  ++CY
Sbjct: 319 IPGTSKNWEAYTAWLTSSNDSDKKFLPNMVDVCY 352


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 573 PPPKXEEARVPSTPPGXSXDXKHERRTARPQAPSPA 680
           P    +E   PSTP   +   KH RR ++ QA +P+
Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSK-QASAPS 522


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 157 LSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSKRS 318
           L  P T    E K   P      +R  E+S+ P  + TPQ  ++       KR+
Sbjct: 306 LLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAPSAPRLQKRA 359


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 487  RGHSYSQTKYIASQTSPPXSGRRFN 561
            R HSYS  K  +S++SP      +N
Sbjct: 930  RAHSYSNRKQASSESSPESQSTHYN 954


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 1/130 (0%)
 Frame = +3

Query: 291 RRRRVQQAIPMRAGALASHDAAPGAVLQALGHHAGPQGRHLQSGASAAPARARHEHAQDT 470
           R+ R  Q  P     +A   A PGA          PQ  ++ +    +P           
Sbjct: 30  RQARAGQTKPATTRPMAEARARPGATAVPRRSPTSPQSAYVPATVYTSP----------- 78

Query: 471 XI*NEPRTQLFTNQIHCEPNVSSRFRSPXQPXQXPPPKXEEARVPSTPPGXSXDXKHER- 647
            I +  R  +    +   PN ++   S   P + PPP    A   +TP   +     E  
Sbjct: 79  -IGSPRRGSVRYTHVMAHPNTTTTV-SENLPEEVPPPYSPAATASNTPQNEASPAATEAV 136

Query: 648 RTARPQAPSP 677
              RP +P P
Sbjct: 137 NHERPASPPP 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,924
Number of Sequences: 5004
Number of extensions: 47534
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)